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Detailed information on CNT30596657


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696596Oryza meridionalisOryza sativa47.0723.2690.27257forward
CNT30555247Oryza meridionalisOryza glaberrima37.1836.1289.66203forward
CNT30370899Oryza meridionalisOryza glumipatula22.1651.9384.3121forward
CNT30109627Oryza meridionalisOryza longistaminata22.1638.7885.12121forward
CNT30102231Oryza meridionalisOryza rufipogon47.851.2891.95261forward
CNT30578064Oryza meridionalisOryza barthii45.666.7690.76249reverse complement
CNT30115706Oryza meridionalisOryza nivara22.1640.685.12121forward
CNT30551818Oryza meridionalisOryza brachyantha23.4429.1687.5128reverse complement

Expression of CNT30596657

Peptides detected in this lncRNA

>peptide 1 (50 aa)
LKQQGKTPSPPSHSFSPFAVMFFHELSSLLIFPSRNLHENERIKPCMSPE*

>peptide 2 (41 aa)
MELAAWCSGSKTLFPPLGEDSGVELCFLCGHCSAGGGEGSE*

>peptide 3 (33 aa)
MIFCYLQLGSCPVGLPLWGRGATGFCFVLLAFV*

Sequence

>CNT30596657
CTTAAACAGCAAGGAAAAACCCCTTCACCTCCCTCCCATTCCTTTTCCCCATTTGCTGTTATGTTCTTCCATGAGCTGAGCTCCCTCCTCATTTTCCCCT
CCCGAAATCTTCATGAAAATGAAAGAATCAAGCCCTGCATGTCACCCGAGTAGATCCCCATGATTCTAAGCTTTCCATCCATCCAAATGGTTTGCACATG
CATAGATTCGTGAGAGAGATCGAGAAGAAAAGAGATGGAGCTTGCTGCTTGGTGCAGTGGCAGTAAGACTTTGTTTCCTCCACTTGGTGAGGACTCCGGC
GTAGAATTATGCTTCCTGTGTGGTCACTGTTCTGCCGGGGGCGGCGAGGGCAGTGAATGATCTTCTGCTACCTTCAGCTTGGCTCTTGCCCGGTTGGTTT
GCCCTTGTGGGGTCGTGGCGCCACCGGCTTTTGTTTTGTGCTTTTGGCTTTTGTTTGAATCTTCTGTTGCTACTTGTGTGCTGTTAGATGGAACCTTGGA
CCCTATTCTGTACCAGATACCTGCTGCACTTGACCCCTTGTTATGC