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Detailed information on CNT30596654


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 6e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180108Oryza meridionalisSecale cereale28.6194.9893.27208forward
CNT30556620Oryza meridionalisPanicum hallii28.6121.1495.19208forward

Expression of CNT30596654

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSCIRFLNHMAPPPPLHHPLFHLIAITGSQKATH*

>peptide 2 (31 aa)
MQRSSNPSVRISDFFRGSEGNQSISDGIVHY*

>peptide 3 (85 aa)
MQLPLPRNLCRCKEAAIQVSESLISSEDPKEINRSAMALCIISSGTYTRGGSSSAGCHPRTTSTARSRCHRGCRRDPCRHGRRRS*

>peptide 4 (34 aa)
MEGVEVEVDVVDHADAAEALADVVALRPQHRLVLV

Sequence

>CNT30596654
CCAGTAGCACGCATTTTTTTTCAGCACCATTAACACGTCACAAACAGAAGAAGGGGAAACAGGGTGGAGACAAATGAGCCATTCATAATTCATCCATTAG
GCATACGAAAAGTAGAGAGTACAGGGGAAAGCAAGATGAGTTGCATCAGATTTCTGAATCATATGGCCCCTCCTCCACCACTCCATCACCCACTGTTTCA
TCTCATAGCAATCACTGGCTCGCAAAAGGCCACACACTGACACAAACTCGAGGACGGACGGACACCATTGATTGCCATACTCCGATCGATCGAACGAACG
AACACGGTCTTATTTCGGTAGCAGATCGATCAAATTATTAGCTAGAGTAGAAGCAGAGCAGACGCGACGACGATGGCAATGCAATGCAGCTCCCGCTCCC
CCGGAATCTCTGCAGATGCAAAGAAGCAGCAATCCAAGTGTCAGAATCTCTGATTTCTTCAGAGGATCCGAAGGAAATCAATCGATCAGCGATGGCATTG
TGCATTATTAGCAGTGGAACTTACACCAGGGGAGGATCTTCCAGCGCTGGTTGTCACCCTCGCACCACTTCCACAGCACGATCTCGGTGCCATCGTGGAT
GCCGCCGTGATCCTTGTCGCCATGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGCCGACGTCGTTGCTCTCC
GTCCACAGCACCGACTCGTCCTGGTAC