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Detailed information on CNT30596627


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554261Oryza meridionalisOryza glaberrima97.8661.0899.56915forward
CNT3067813Oryza meridionalisLeersia perrieri40.8648.5486.13382forward
CNT30108809Oryza meridionalisOryza longistaminata55.9490.897.71523forward
CNT30102787Oryza meridionalisOryza rufipogon10089.8297.86935forward
CNT30551346Oryza meridionalisOryza brachyantha27.8122.9988.85260forward

Expression of CNT30596627

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MSCNPVNICATTYEQSCHPYVLFHPLSKGTELF*

>peptide 2 (35 aa)
MNNHVIPMFFFTLSARVLNCFDRYSNEVPQIMLHYQ

>peptide 3 (43 aa)
LLCGSLQLVLVQVGPRCFLNLLSWVSLTATGERQEFGESKQET*

>peptide 4 (48 aa)
MTMSWGLAAHIVDMVWMVLAGWVSTCLVIAGEIARGMRNGEISPFVVG*

Sequence

>CNT30596627
CTCCTATGTGGCAGTCTCCAGTTGGTTCTTGTGCAGGTTGGTCCTAGGTGTTTCTTGAATTTGCTCAGTTGGGTCAGTTTGACAGCGACAGGTGAAAGGC
AAGAGTTTGGGGAAAGCAAGCAAGAAACTTGATGAATCTGAGGGCGGAAGCAAAGGGGGAAACAGTCCCACTCTGAAGAGTCTGAAGATTCCCCAAGGTC
TATTTGGTTTCCAATCTTATTGAAGCAGGAGAAGAATTGTACGTGCTTGGGTGGTGAAACACAAGATCCTGATTCAATCACTGCCATGGGTGAAGGGTTC
TTGCAAACTGGAGTCGATTCAGTTGTTGCATGGTGAGGTGAATTTGCCATCTCAGGATTATACAGAGGCTAGGTGTTTGTGGAATTGCCTCCCTGGAAGC
AGCTGTAGGGAAAGGCTGGAGAGGAGAGGAAATTGAGGGAGAAGAGTGCGAGGATGACGATGTCGTGGGGGCTTGCGGCTCACATTGTGGACATGGTGTG
GATGGTGCTCGCCGGCTGGGTTTCGACGTGCCTGGTGATCGCCGGTGAGATAGCCCGCGGCATGCGGAACGGGGAGATCAGCCCCTTTGTTGTTGGCTGA
ATCCTCCTGGGCCATTCTTCCTTCATTCATTGATGCAGATAGATTTTGTCGAATCCAGTCCTTCAATACACATTGCATTATACTGTACAGAGCCCATAAA
TCTCGATTAGCGTTCCACTGATTGCCTTCAGGCGTAAACAGAAGTGGTAGACTCTAGGTCATTATCTTTTCATTCTTACATTTTTTTTATGTCATGTAAT
CCTGTAAACATTTGTGCAACTACATATGAACAATCATGTCATCCCTATGTTCTTTTTCACCCTCTCAGCAAGGGTACTGAACTGTTTTGATCGATACTCA
AATGAAGTTCCACAGATTATGCTGCATTATCAGGC