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Detailed information on CNT30596591

BLAST search results

BLAST vs Swiss-Prot:
sp|Q6Z4N4|40G3_ORYSJ, E-value = 7e-53

BLAST vs NONCODE:
NONZMAT000139, E-value = 4e-56

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30694973	Oryza meridionalis	Oryza sativa	49.89	27.94	97.87	235	forward
CNT30672063	Oryza meridionalis	Setaria viridis	49.04	44.77	89.61	231	forward
CNT30289434	Oryza meridionalis	Triticum aestivum	49.89	40.59	90.64	235	forward
CNT30554471	Oryza meridionalis	Oryza glaberrima	49.89	42.65	97.87	235	forward
CNT30436341	Oryza meridionalis	Aegilops tauschii	38.22	59.21	91.67	180	forward
CNT30251924	Oryza meridionalis	Avena sativa	49.89	43.2	91.06	235	forward
CNT30340854	Oryza meridionalis	Eragrostis tef	30.15	62.28	94.37	142	forward
CNT30370660	Oryza meridionalis	Oryza glumipatula	49.89	40.94	97.87	235	forward
CNT30102628	Oryza meridionalis	Oryza rufipogon	49.89	18.52	97.87	235	forward
CNT30577143	Oryza meridionalis	Oryza barthii	49.89	46.35	97.87	235	forward
CNT30496422	Oryza meridionalis	Digitaria exilis	48.83	37.28	88.26	230	forward
CNT30117165	Oryza meridionalis	Oryza nivara	48.41	50.89	97.81	228	forward
CNT30604388	Oryza meridionalis	Oryza punctata	33.76	47.89	97.48	159	forward
CNT30551356	Oryza meridionalis	Oryza brachyantha	33.33	45.38	96.82	157	forward

Expression of CNT30596591

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLTMRMQRKPLPTSLLSVHSTDSSWYSGL*

>peptide 2 (43 aa)
MEGVEVEVDVVDHADAAEALANILALCPQHRLVLVLWVVGNQLH

>peptide 3 (33 aa)
KSNCMYVIIYVSPSERSSYCQVINLYRYKYTTR*

Sequence

>CNT30596591
CCAAGTCCAACTGTATGTATGTAATTATATATGTGTCGCCCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAACTTGTACAGATACAAGTACACCACACG
GTAATCATACGGCAAGGTAGGTAGGTACTCCACGTAGCTAGCTAGCCGAGAATTATTCTGCATCATATTCATATCGACTTGAGGTAGCGATCGATCGATA
TGAATAGAGATCGAGCTGGATGAATCGATCAGACGATCAGTAGTAGGGCTGGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCACAGCACGATG
TCGGTGCCGTCGCGGACGCCGCCGTGGTACTTGTCGCCATGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTGACCATGCGGATGCAGCGGAAGCCCTTGC
CAACATCCTTGCTCTCTGTCCACAGCACAGACTCGTCCTGGTACTCTGGGTTGTAGGGAACCAGCTTCACC