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Detailed information on CNT3059659


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Arabidopsis lyrataSetaria viridis34.5672.1284150forward
CNT30532843Arabidopsis lyrataEucalyptus grandis46.5427.680.2202forward
CNT30316236Arabidopsis lyrataCorylus avellana50.4647.7182.19219forward
CNT30547574Arabidopsis lyrataIpomoea triloba16.362087.3271forward
CNT30512729Arabidopsis lyrataJuglans regia46.7719.7383.74203forward
CNT30372986Arabidopsis lyrataArabidopsis thaliana49.7721.1496.76216forward
CNT30276060Arabidopsis lyrataChenopodium quinoa5034.2383.87217forward
CNT3019597Arabidopsis lyrataCitrullus lanatus46.5427.0184.16202forward
CNT30728649Arabidopsis lyrataCorchorus capsularis44.9317.9184.62195forward
CNT30379936Arabidopsis lyrataManihot esculenta35.9446.7183.33156forward
CNT30405825Arabidopsis lyrataBeta vulgaris21.8941.4889.4795forward
CNT30711584Arabidopsis lyrataGlycine max50.4631.1180.37219forward
CNT3045373Arabidopsis lyrataPrunus dulcis49.0827.1783.57213forward
CNT30191304Arabidopsis lyrataSecale cereale50.4616.8383.56219forward
CNT30300473Arabidopsis lyrataTriticum aestivum50.4622.6283.11219forward
CNT30224354Arabidopsis lyrataHordeum vulgare50.4642.282.19219forward
CNT30395070Arabidopsis lyrataTriticum turgidum50.4628.6382.19219forward
CNT30561658Arabidopsis lyrataActinidia chinensis44.2416.4186.98192forward
CNT3085191Arabidopsis lyrataVigna radiata39.6323.9984.3172forward
CNT30510505Arabidopsis lyrataSolanum lycopersicum47.4718.9787.86206forward
CNT30552635Arabidopsis lyrataOryza glaberrima50.4621.182.19219forward
CNT30143941Arabidopsis lyrataMedicago truncatula32.9531.9281.82143forward
CNT30440797Arabidopsis lyrataAegilops tauschii50.4630.0883.11219forward
CNT30313757Arabidopsis lyrataCamelina sativa49.5424.5294.88215forward
CNT30612508Arabidopsis lyrataArabis alpina508.5590.32217forward
CNT30137280Arabidopsis lyrataLolium perenne20.0519.2987.3687forward
CNT3015270Arabidopsis lyrataZea mays89.8686.0979.49390forward
CNT30605685Arabidopsis lyrataGossypium raimondii50.4628.6681.28219forward
CNT30203835Arabidopsis lyrataHelianthus annuus20.0518.1283.9187forward
CNT30684236Arabidopsis lyrataTriticum urartu50.4626.6483.56219forward
CNT30345702Arabidopsis lyrataEragrostis tef43.0923.1483.42187forward
CNT30361520Arabidopsis lyrataSorghum bicolor42.8627.1982.8186forward
CNT30596122Arabidopsis lyrataOryza meridionalis50.4631.6582.65219forward
CNT30359537Arabidopsis lyrataLactuca sativa24.6516.2483.18107forward
CNT30370118Arabidopsis lyrataOryza glumipatula37.5626.3884.05163forward
CNT30154011Arabidopsis lyrataPrunus persica23.2735.9485.15101forward
CNT30107537Arabidopsis lyrataOryza longistaminata50.4623.8380.82219forward
CNT30332479Arabidopsis lyrataDioscorea rotundata23.9636.7584.62104forward
CNT30149525Arabidopsis lyrataBrachypodium distachyon24.4235.183.96106forward
CNT30100253Arabidopsis lyrataOryza rufipogon50.4619.8782.19219forward
CNT30575986Arabidopsis lyrataOryza barthii50.4618.5482.65219forward
CNT30497701Arabidopsis lyrataDigitaria exilis42.456.6280.98184forward
CNT30116094Arabidopsis lyrataOryza nivara50.4624.8982.19219forward
CNT30604019Arabidopsis lyrataOryza punctata50.4664.7982.19219forward
CNT3050899Arabidopsis lyrataCucumis sativus37.3364.2982.72162forward

Expression of CNT3059659

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPLMFSSHRGPSLDAHWKPATTESLISLRY*

Sequence

>CNT3059659
GGTCAGAAGACATCATTTCCCAATGATCAAACACACACTGTGGGAAAGCCTGTCCTGAGGTTGCTGCCCTAAGCTGACTCGAGAATCCGAAAGACTCCAC
AACAGGCAGGTACGCCTTGATGTTGTACAGCGGAGTTCCTGGCCTCTGCATCTCCTCAAAGACGTGTCCACGCTTCTGATTCAGCACACTGTAGATTCCT
CCAAGAGCTCCCTCTGCCTGGGCTTAGCTGTGATCTGGGAAGCGTATATGACCCTTCTGGCTGTTGGGATAACCTGACCACCTCCTCTGTGGATGGCATC
AGAGTGAAGCACCACATCACAAACCTCGAAACAGATGCCTCTCATGTTCTCTTCACATAGAGGACCTTCCTTGGACGCCCACTGGAAACCAGCCACCACT
GAGTCCTTGATTTCATTAAGGTACTGAACTCCCT