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Detailed information on CNT30596571


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577188Oryza meridionalisOryza barthii72.9480.2195620forward

Expression of CNT30596571

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MSGTFAANAMASAKWKHSERIDLLISLSLQTLLLTPDSTQAVVARCV

>peptide 2 (35 aa)
MQWQAPNGSTVRGLISSSRCHYKLYYSLLTVHKLW*

>peptide 3 (37 aa)
RYNFIKQPRNSDTQGYMLFYSWYVRTYITHMHIYALL*

>peptide 4 (35 aa)
MLYYKKHACSHATALRKHIDSHMDTPVNNTRQTHR*

Sequence

>CNT30596571
ACAGATACAATTTCATAAAACAGCCCAGAAATAGTGACACACAGGGATACATGCTCTTTTATTCATGGTATGTACGCACATACATAACACACATGCATAT
ATATGCTTTATTATAAGAAGCACGCCTGCTCACATGCAACAGCATTAAGAAAACACATAGATAGCCACATGGACACACCAGTGAACAACACACGACAAAC
ACATAGATAGTCACTAGAGCAATAGTACATACCAAAACTATGCGGAATCATACGTAGCAAACAACCAAGTCTACTCAGTTCTCGGGCACAATTATAGCTA
TTGCTGGTGAAAGAGGTGGTGGCTTTGGCAGAGATGGCTCTGGCTGAGGCTTGGGTTCTGGCTTAGGATCAGGCTGTGGCTCCGGCTTGGGATTAGGATT
TGGCTTGGGGTTAGGACTCGGCTCAGGTTTGGGTTCTGGCTTTGGCTCCGGCTTAGGATTTGGGGTCGGCTCCGGCTGTGGCTTGGGCTTTGGATTTGGT
TTTGGGTCAGCTTTGGGGCTAGGTTGTGGGTTCGGTTGAGGATCTTGTTTTGGGTCAGGCTGTGGTGTAGGTTTTGGGTCAGGCTGCGGTGATGGTTTTG
GATCCGGCTGTGGGTTAAGTTGAGGGTTAGGCTGTGGACTGGGCTTTGTCTCTGGTTGTGGTTTTGGTGTTGGGTCAGATTTAGCTTCAATCACGCGTCC
ATTGGCAATGTCAGGAACATTTGCCGCCAATGCAATGGCAAGCGCCAAATGGAAGCACAGTGAGAGGATTGATCTCCTCATCTCGTTGTCACTACAAACT
CTACTACTCACTCCTGACAGTACACAAGCTGTGGTAGCTAGGTGTGTTGC