Detailed information on CNT30596560


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9MA63|Y3550_ARATH, E-value = 9e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30386340Oryza meridionalisTriticum turgidum28.7621.0586.07201forward
CNT30658060Oryza meridionalisTriticum dicoccoides28.7626.9886.07201forward
CNT30132065Oryza meridionalisLolium perenne29.926.8687.08209forward
CNT30680595Oryza meridionalisTriticum urartu28.7621.2585.57201forward
CNT30102674Oryza meridionalisOryza rufipogon14.4543.53100101forward
CNT30577004Oryza meridionalisOryza barthii85.26100.1794.3596forward

Expression of CNT30596560

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MHTSKTPFSAAISAPTHTYSFQDFRRRLPLTYWVLADSLFDGWASGDDSPKTLAMRSVGMAGRYCAPV*

>peptide 2 (57 aa)
MTRRKPWRCARWGWRGGTVLRCSPCRPRRRSPCCTSRPSRRRWARRSAPPAGTAAGC*

>peptide 3 (49 aa)
PNCTGLAKRLRHQPQLLYKTRRIKRTPHHKVKELSRTPSSTKMSSHAYI*

Sequence

>CNT30596560
GCCTAATTGCACTGGATTAGCTAAAAGATTGCGACATCAACCACAGCTTTTATACAAAACCAGGAGGATTAAACGTACGCCACACCACAAAGTAAAAGAG
CTAAGTAGAACACCATCATCCACGAAAATGTCGTCACATGCATACATCTAAAACACCATTTTCTGCTGCCATAAGCGCCCCCACTCATACTTATTCATTT
CAGGACTTCAGGCGAAGGCTACCTCTCACCTACTGGGTCTTGGCCGACTCGCTCTTCGACGGCTGGGCCTCCGGCGATGACTCGCCGAAAACCTTGGCGA
TGCGCTCGGTGGGGATGGCGGGGAGGTACTGTGCTCCGGTGTAGCCCTTGTCGGCCGCGGCGGCGATCACCTTGTTGTACTTCTCGGCCCAGTAGGCGGC
GGTGGGCACGGCGATCTGCGCCACCTGCGGGAACAGCGGCAGGTTGTTGAGCGAGCGCCAGGTGGAGACGGCGAGGTCCTTGGCCGCCGGCTGGATCTTG
CCGTACACGCCCTTGGCCACGGGCTCGACCTTGGCGTACGCGACGCGCGCGGCGCCGGTGACGCCCGACTGCTGCACCTCCGCAGTGAGCTCCCTCGCCA
CGTCCGGCACGCCGCGGGCCATCGCGCAAGCCTTGGCGGAGGCGGACTTCAGCGTTGGCGGGAGGTGTCGGTCCAGCTCTTGCACCGTATCATCCACCT