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Detailed information on CNT30596559


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30370769Oryza meridionalisOryza glumipatula22.4129.6999.06106forward
CNT30102387Oryza meridionalisOryza rufipogon35.123.6897.59166forward

Expression of CNT30596559

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTTLSQTNIHIPHKHKTRTYSCHTARLSL*

>peptide 2 (44 aa)
KGKRKHSEGARATMPRALDYKKNPKYIRHAINATSTNNRPTTHT*

>peptide 3 (53 aa)
MLLIFYIKRKLGVGGTHITYVMSSVAEPANLGSKTVANLLAVSRHGEELDRAS*

>peptide 4 (58 aa)
KENENTVRERAQRCRARWIIKKTPSILGMRSMQQALITGQPHTHDNTLTDKHTHSTQA*

Sequence

>CNT30596559
AAAGGAAAACGAAAACACAGTGAGGGAGCGCGCGCAACGATGCCGCGCGCGTTGGATTATAAAAAAAACCCCAAGTATATTAGGCATGCGATCAATGCAA
CAAGCACTAATAACCGGCCAACCACACACACATGACAACACTCTCACAGACAAACATACACATTCCACACAAGCATAAGACAAGAACATACAGTTGTCAT
ACAGCTAGGCTATCCCTGTAGGAGTTCTAGCCATTTTATGCTATTAATTTTCTATATCAAACGCAAGCTAGGAGTAGGAGGCACACATATTACGTACGTT
ATGTCCTCTGTTGCAGAGCCTGCAAATCTTGGCAGTAAAACAGTAGCAAACTTATTAGCAGTTAGCCGGCATGGTGAGGAGCTGGATCGAGCTAGCTAGT
GACTATAAGTGATTGGTACCTGGTGGAGCTAGCTACCTGGTGGCTATCTCTAGTGAGTATGAAATGGCTGGAT