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Detailed information on CNT30596548


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004411, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693123Oryza meridionalisOryza sativa70.4650.6594.151283reverse complement
CNT30553269Oryza meridionalisOryza glaberrima41.1341.8786.38749reverse complement
CNT30369450Oryza meridionalisOryza glumipatula71.6646.5685.291305reverse complement
CNT30107694Oryza meridionalisOryza longistaminata73.8190.287.051344reverse complement
CNT30102444Oryza meridionalisOryza rufipogon70.2966.6385.621280reverse complement
CNT30577878Oryza meridionalisOryza barthii75.420.5485.361373reverse complement
CNT30115703Oryza meridionalisOryza nivara63.8168.6485.971162reverse complement

Expression of CNT30596548

Peptides detected in this lncRNA

>peptide 1 (30 aa)
LDLHCIHLNKPPKEMLLHKIIGDFTTLVAN*

>peptide 2 (82 aa)
MRCAVEVKGIVKLRPLYASRRGVLGVALRPWVWALPGFKTNGSTSGIENHERLHGRHKVPTGGFLVAKGVIWDKRKYLKRQI*

>peptide 3 (82 aa)
MRSERNIINNERSSGVLKVFRENWLRDPRHPNQVFTIHTQRTIINIFTCTSINIIIALLGVYLPPARGLKEEPLYRGTTFAR*

Sequence

>CNT30596548
TCTGGATCTTCATTGCATACATTTGAATAAGCCTCCAAAGGAGATGTTATTACATAAAATAATAGGGGATTTTACAACGCTTGTGGCTAACTAATCCAGC
AGAGGCTATAGAAGGATTAAACACTAATGTTTTACTATAGACTTAAACCATCTAACTAATCTAGACTTGAGAACTAGGTTGAAATGAAACTAACTTATAT
GATTGAACTCTCGGCTTCGGCAAGAACTCCAAATTAACTCTGAAAGAAGGGGGTTAAAGCACGGGTGAGTACAACGTACTCAACAAGCTATTATATTCAA
GTATGAATGTATGAAATAATAGTATTTGAGTAGAGCTAGATCTATTTGCAGAAAGCTGAGAAAGTAGAAGGAGAAAGTCTATAATGTTTTGAAATGCAAC
AATATTTAATAAAACCTGGAGTTATATTTCTAACCAAGATGCCATAGTGAGTCCCGATGCTCAATATCCATGAGCACAGCTATTCAAATAGTTTCAGAGA
TATTCATACTGCAGTAGATATACGCTTTACCCGCAATCCATGACATGCTAATATTCATCAGCTTAGTCATGGCAAAGCTTTTCGGTTACTAACATCAGTG
GTACATGTTCTATGAACTATAGTCCTCATGCGCTCTGAACGTAACATTATCAACAACGAGAGGAGTTCTGGCGTTCTCAAGGTTTTTAGAGAGAACTGGT
TGAGAGACCCCCGTCATCCCAACCAGGTTTTCACAATACACACACAGCGCACAATAATCAATATATTTACCTGCACCTCGATAAATATTATAATCGCCCT
GCTCGGCGTATATCTGCCTCCTGCGCGAGGACTTAAAGAAGAACCATTGTACAGAGGTACCACCTTTGCTAGATAACATACTTTGCTAAGTCTGTCCCCA
TTCTAGAATTGGCGGTCGTACTCGTTCGTTCTTTACATGTACTTGGCAATCTTATGTCGGTTGGAACAGTACTAGTCACCCGGAAATCAACCATTTCTAC
CGTACTGTTCTAATCTAAGTTCATTATATTTTATGCAATCTAACTAGGCATGGCTAAGCAAAATCTAGCATATATCTGGTTTACTATATGTTCAAGTTAT
GCATTTAAAATCATGAATGGCTAATGCATGGAATAATAGAGATATAGAATATAGGATAATAATGCTCAAAGGGGAGGAATAATAACTTGCCTTGCTCCAA
TGCAAATAAATATGAGATAGACAACCTGATTATCCGATCCTCGAAACACCACAGATTGCCATCCAAAAGATAATAGACTCTACTAAGAAAGACGAAGAAC
AAAATTCAATAAAAGCCAGAAATAACAAGAAAATGATAAATGATTAGGAGGGCTAGGGTTTGGTTGTGTGCTAGTCGATGCTAGAGCATAACGACTAGGT
TTGGTATCTTCTCTAGCCGATGTCAACAGACAGCATAACGGCTAGAGGGATAGGAGGTTTGTGTGGGTTTAGTGGGGCGGAAGTGTTACTCCGACAACCG
TGAGTGGCGGCGGAGCGGCTAGGATCACACAGAGCCCGAGAGCTAATTATGCGGTGTGCTGTGGAGGTCAAGGGAATAGTGAAGCTCCGACCGCTGTACG
CATCAAGGCGTGGGGTGCTAGGAGTAGCACTTCGACCTTGGGTTTGGGCTTTGCCGGGCTTTAAAACCAACGGTTCGACGTCGGGGATAGAAAACCACGA
ACGTCTCCATGGAAGGCATAAAGTTCCAACCGGCGGCTTTTTAGTGGCTAAAGGGGTAATTTGGGACAAAAGAAAATATTTGAAAAGGCAAATATAAATT
CAAACGATATTTGAATAAATT