Detailed information on CNT30596537


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT000139, E-value = 5e-53

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30289113Oryza meridionalisTriticum aestivum36.5845.9394.09203forward
CNT30681546Oryza meridionalisTriticum urartu34.2386.7693.68190forward
CNT30341745Oryza meridionalisEragrostis tef35.539.4889.34197forward
CNT30361377Oryza meridionalisSorghum bicolor33.6916.6193.58187forward
CNT30148227Oryza meridionalisBrachypodium distachyon42.5293.6589.83236forward
CNT30556699Oryza meridionalisPanicum hallii37.1234.5191.75206forward

Expression of CNT30596537

Peptides detected in this lncRNA

>peptide 1 (34 aa)
TKSNCMYVIIYVSPSERSSYCQVINLYRYKYTTR*

>peptide 2 (34 aa)
MLFTMRMHLNPLPTSRLSVHSTDSSITSGLYGTSR

>peptide 3 (42 aa)
MEGVEVEVDVVHHADAPEPVAHVAALRPQHRLVHHLRVVRHQP

>peptide 4 (48 aa)
MLFTMRMHLNPLPTSRLSVHSTDSSIXARCRCRRGRRRGTCRHGRRRS*

>peptide 5 (58 aa)
MEGVEVEVDVVHHADAPEPVAHVAALRPQHRLVHXSTMSVPSRTPPWYLSPWKASKLR*

Sequence

>CNT30596537
ACCAAGTCCAACTGTATGTATGTAATTATATATGTGTCGCCCAGCGAGAGGAGCTCTTATTGCCAGGTAATTAACTTGTACAGATACAAGTACACCACAC
GGTAATCATACGGCAAGGTAGCGATCGATCGATATGAATAGAGATCGAGCTGGATGAATCGATCAGACGATCAGTAGTAGGGCTGGATCTTCCAGCGCTG
GTTGTCGCCCTCGCACCACTTCCACAGCACGATGTCGGTGCCGTCGCGGACGCCGCCGTGGTACTTGTCGCCATGGAAGGCGTCGAAGTTGAGGTAGATG
TTGTTCACCATGCGGATGCACCTGAACCCGTTGCCCACGTCGCGGCTCTCCGTCCACAGCACCGACTCGTCCATCNGAGCACGATGTCGGTGCCGTCGCG
GACGCCGCCGTGGTACTTGTCGCCATGGAAGGCGTCGAAGTTGAGGTAGATGTTGTTCACCATGCGGATGCACCTGAACCCGTTGCCCACGTCGCGGCTC
TCCGTCCACAGCACCGACTCGTCCATCACCTCCGGGTTGTACGGCACCAGCCGAA