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Detailed information on CNT30596498


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692203Oryza meridionalisOryza sativa70.0534.5384.62676forward
CNT30370658Oryza meridionalisOryza glumipatula30.6745.485.47296forward
CNT30100787Oryza meridionalisOryza rufipogon70.0569.0584.62676forward

Expression of CNT30596498

Peptides detected in this lncRNA

>peptide 1 (34 aa)
PLYSDLPLATDDSKRSYVKIHWGSSNHGGGGIHR*

>peptide 2 (33 aa)
MRRHSSAATRRYKAVHALAATVSQHRSIDSLLI*

>peptide 3 (48 aa)
MSHIGGDHILCFVLSLRVLASESLHCFLFLWSDNVYSEFSACTSSVFH*

>peptide 4 (35 aa)
MPLRRRYHSIDPSILFLSSRAVTLSTRRRRWLHLG*

>peptide 5 (74 aa)
SVFGFTASYRRLEAVVRQDPLGIEQPRRRRHPSVICWDAATFICSNTALQGGACPCGDGITASIHRFSSYLAVR*

>peptide 6 (71 aa)
MQMRDASIVGIDGADNKTLQHVRPCGDGAESVIPLIQQDTCILVPLSGAVARVCVIPSVLINRSVNQRILR*

Sequence

>CNT30596498
CCTCTGTATTCGGATTTACCGCTAGCTACCGACGACTCGAAGCGGTCGTACGTCAAGATCCATTGGGGATCGAGCAACCACGGCGGCGGCGGCATCCATC
GGTGATTTGCTGGGATGCGGCGACATTCATCTGCAGCAACACGGCGTTACAAGGCGGTGCATGCCCTTGCGGCGACGGTATCACAGCATCGATCCATCGA
TTCTCTTCTTATCTAGCCGTGCGGTGACGCTGTCTACGCGGAGGCGGCGGTGGCTTCACCTTGGCTGACCTATCGAAGCTAGCGCCGGTGACCTTAAAAA
CGACGCCATCAATCCTTCGTGAAGCCAGTGTGGCCGTGCGGCTGGCATAGATCAAGCCCGTGCAACGGTCAAGGCAAGCCCTTTCTTCCTTCTTCTGGTT
TTGTTTGCCTTTTTCCTGTAGAACGATTACATATATACTCTTCCTTTTCCTATTGGGTCTATCTCTGTTGTTTGCAGAAGAGTATGCAGACATGAAGTCC
CTAATATGACGTTGACAGAATGATTAAGCCTCTAAAGAACTGCATTTGTTTCGTGCATGCAGATGCGAGACGCATCTATCGTGGGCATAGATGGTGCTGA
CAACAAAACACTCCAACATGTACGGCCGTGTGGCGACGGCGCCGAGTCCGTGATTCCGTTGATCCAGCAAGACACGTGTATACTTGTTCCCCTCTCCGGC
GCGGTGGCGCGTGTTTGCGTGATCCCATCGGTGCTAATTAACCGATCTGTCAACCAGCGTATTCTTCGATGAGCCACATCGGGGGCGATCACATATTATG
TTTTGTTCTTAGTCTGCGTGTATTGGCTTCCGAAAGCCTGCATTGTTTTTTATTTCTTTGGTCTGATAATGTCTATTCAGAATTCAGTGCATGCACTTCT
AGCGTATTTCATTAAGCTTTATCCAGAATGCAGCAACAAGATACTTTACTAGTACTTCTTTATCG