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Detailed information on CNT30596497


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694173Oryza meridionalisOryza sativa95.4141.1587.19437forward
CNT30521575Oryza meridionalisSetaria italica57.8617.8183.77265forward
CNT30443043Oryza meridionalisAegilops tauschii17.6934.1890.1281forward
CNT30476783Oryza meridionalisSaccharum spontaneum82.5341.6382.8378forward
CNT30136929Oryza meridionalisLolium perenne29.6923.6183.09136forward
CNT30678948Oryza meridionalisTriticum urartu28.1716.6282.95129forward
CNT30370601Oryza meridionalisOryza glumipatula21.44095.9298forward

Expression of CNT30596497

Peptides detected in this lncRNA

>peptide 1 (71 aa)
IVSSGSDESAIEQLPEWQEAMGDLPASFHDGHSWLHHVAVEKPRVLVELLHHVRAESHRVGVDAVHVVDER*

>peptide 2 (52 aa)
MNGDSLIPTRCAPTSATMASITSTTKRHRFSRLPPYSSLRSLALSFMNCSRR*

>peptide 3 (40 aa)
RSYPPAAMKVPLNSFRNGRRPWVIFLRPSTMAILGSTMWQ*

Sequence

>CNT30596497
CGATCGTATCCTCCGGCAGCGATGAAAGTGCCATTGAACAGCTTCCGGAATGGCAGGAGGCCATGGGTGATCTTCCTGCGTCCTTCCACGATGGCCATTC
TTGGCTCCACCATGTGGCAGTAGAGAAACCCCGGGTGCTTGTTGAGCTGCTGCACCATGTACGAGCCGAGAGCCACCGGGTCGGAGTCGACGCAGTCCAT
GTAGTCGATGAACGGTGACAGCCTGATCCCCACACGGTGCGCTCCAACCTCGGCGACGATGGCGTCGATCACCTCGACAACGAAGCGGCACCGGTTCTCG
AGGCTGCCACCGTACTCGTCGCTGCGGTCGTTGGCGCTGTCCTTCATGAACTGCTCCAGGAGGTAGCCGTGCGCGCCATGGATCTCCACGCCGTCGAACC
CCGCCTCGATGGCGTTCCGCGCGGCTCGCCTGAAGTCGTCGACGATCTGAGGGATCTC