Detailed information on CNT30596470


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554193Oryza meridionalisOryza glaberrima10.7844.8396.15104forward
CNT30109799Oryza meridionalisOryza longistaminata40.2140.5997.68388forward
CNT30577765Oryza meridionalisOryza barthii27.7714.7795.9268forward
CNT30115672Oryza meridionalisOryza nivara32.4430.1396.81313forward

Expression of CNT30596470

Peptides detected in this lncRNA

>peptide 1 (38 aa)
GNFPRGGGGVAKTRWWGWRDGTALSSGRHLFFDCTCTH*

>peptide 2 (33 aa)
MVSFRLINHPMNGLLMCHFGDVGRSLDFVVHLD*

>peptide 3 (80 aa)
KFSSRRRRCSEDAMVGVARRHGALLRPPSFLRLHVHPLELEKTNLLLPGTLYPLLPGIVLCSRKMAKKKNPICLYGCFDR*

>peptide 4 (44 aa)
MNLMKECFLRYHVALAMCFIITLLSRLNCASTHSNFQREKLEEG*

>peptide 5 (40 aa)
MDVSIGDEPDERMFFEVPCGSSYVLHYYFVVKVELCFHTF*

Sequence

>CNT30596470
GGAAATTTTCCTCGAGGAGGCGGCGGTGTAGCGAAGACGCGATGGTGGGGGTGGCGCGACGGCACGGCGCTCTCCTCCGGCCGCCATCTTTTCTTCGATT
GCACGTGCACCCATTAGAGTTGGAGAAGACCAACCTCCTCCTTCCTGGGACATTGTACCCTCTCCTTCCTGGGATAGTGTTGTGCTCTAGGAAGATGGCA
AAGAAGAAGAACCCAATTTGTCTTTATGGATGTTTCGATAGGTGATGAACCTGATGAAAGAATGTTTTTTGAGGTACCATGTGGCTCTAGCTATGTGCTT
CATTATTACTTTGTTGTCAAGGTTGAACTGTGCTTCCACACATTCTAATTTTCAGAGAGAGAAACTAGAAGAAGGTTGAGGTGGTCATCCTTTTCTACAT
TCACCATATATCTGTCTATCCACTATATATGATTTCTGCATCCTTTTAAAATTCAGGCAACTCAAGATTCACATCTGTTATACATTTAAGATTCACATCT
GTTATACATTTAGAGTCTGGAACTTTGCGCATTATAATGTTCATTGCATTATGTCTAGTAGAAGAAAAAAGAATAATTGGATGGTTGTAGTTCTGTTTCT
TCTCTATTTCTGAGATAGGTAAACTGATGTCTACTAACTGATTTTCCTTGTAGGCTCCTTGAAATTGACTGGTAGGATGTTCCATAGAATTTCTTTGATA
GTAGCATGTTCCATAGAATTTCTTTGATGGTAGCAGCTTTCTGATGGTGTCATTTAGACTAATTAACCATCCAATGAATGGTCTACTGATGTGTCATTTT
GGGGATGTTGGGAGAAGTTTGGATTTTGTTGTGCATTTGGACTAATTAATCATCCAAGTCGTCGGCAGATGGATTCAACTTGCTAAGTGTAAGGGAATGG
AATCAGAACAATCTTCTTATTATACTGTATAAACATCTCCTGTACTTTTGGCTGGCCATACATTG