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Detailed information on CNT30596453


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692209Oryza meridionalisOryza sativa98.3788.9391.49482forward
CNT30369820Oryza meridionalisOryza glumipatula98.3792.1691.29482forward
CNT30100893Oryza meridionalisOryza rufipogon98.3790.7791.29482forward
CNT30575668Oryza meridionalisOryza barthii95.9297.1191.49470forward

Expression of CNT30596453

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSLADRPTDLLNTTEIKLAVVLGWLSYWWRFIDLRRSYLVLCC*

>peptide 2 (31 aa)
KYLIFVEFIIGVSFNRLVRLANSQALSCGMN*

>peptide 3 (42 aa)
MTHHRSYMVLHRTVCCRHIPSFVRGCTLLQSIECKVVAYTRTG

Sequence

>CNT30596453
CAAATATCTCATATTCGTAGAGTTTATCATTGGTGTAAGCTTCAATAGGTTAGTGCGCTTAGCAAATTCACAGGCCCTATCTTGTGGTATGAACTGAGTA
CGCAATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCGTGAATTCGCTAAGTGTTCAAACCCACTGAAGTTTTGTGTGAAGGTAAATATT
TTGAAGTGTTCGTGAAGGAAATGCAGGTGAATGTCGCTAGCGGACAGACCTACGGACCTCCTCAACACCACTGAAATCAAATTGGCCGTAGTCTTGGGTT
GGCTGAGTTATTGGTGGCGGTTCATCGATCTGCGACGGTCCTATCTCGTGTTGTGCTGTTGATGACCCACCACCGTAGCTACATGGTTCTCCATAGGACT
GTGTGCTGCCGGCATATCCCATCATTTGTTCGGGGTTGTACATTACTACAAAGCATTGAATGCAAAGTTGTAGCGTACACACGTACTGGA