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Detailed information on CNT30596439


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109856Oryza meridionalisOryza longistaminata48.2218.3596.06406forward
CNT30102186Oryza meridionalisOryza rufipogon79.45100.1598.65669forward
CNT30576596Oryza meridionalisOryza barthii60.3382.695.08508forward

Expression of CNT30596439

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MVFAACDMPLLSRVFDSLYDKRTRSIDPIRVCFERFLLSCMEATVVLSHCNVRPLILVVAVTKKMIIE*

>peptide 2 (78 aa)
MDEMAARPLPVDSWCDANLTPLHRWYLLHATCHYCLEFLTRSMTKEPGALIPSGFVLRDSSCLAWKRPLYFHIAMLGP*

>peptide 3 (34 aa)
RISPVPEKSPAAEVNPNPPFYYSLLPDLSRRGSV*

>peptide 4 (54 aa)
MAETARWSTRATTSAERLHLRRLGGRARGQHQAVVRRAPCGPDLVGGAWRDRDG*

>peptide 5 (37 aa)
MRWRRGHFLLIPGAMRISPLSTDGICCMRHATTVSSF*

Sequence

>CNT30596439
CAGGATCTCCCCCGTGCCGGAGAAATCGCCGGCGGCTGAGGTAAACCCTAATCCCCCTTTCTATTATTCTCTTCTCCCCGATCTCTCCCGGCGAGGGAGC
GTGTGAGTGGGTGCCGGCGATGGCGGAGACGGCGAGGTGGAGCACGCGTGCGACGACGAGCGCCGAGCGGCTCCATCTGCGCCGGCTGGGGGGGCGCGCC
CGTGGGCAGCACCAAGCCGTGGTCCGGCGAGCGCCGTGCGGCCCGGACCTCGTCGGCGGGGCCTGGCGCGACCGCGATGGATGAGATGGCGGCGAGGCCA
CTTCCTGTTGATTCCTGGTGCGATGCGAATCTCACCCCTCTCCACCGATGGTATTTGCTGCATGCGACATGCCACTACTGTCTCGAGTTTTTGACTCGCT
CTATGACAAAAGAACCAGGAGCATTGATCCCATCCGGGTTTGTTTTGAGAGATTCCTCTTGTCTTGCATGGAAGCGACCGTTGTACTTTCACATTGCAAT
GTTAGGCCCTTAATTCTTGTTGTTGCTGTTACAAAAAAGATGATCATTGAGTAGGAGTACTTACAATCCCAATTACCCATTTGTATATCTATCATTATTC
TCTTAACGGTACCTTATCGCTTGATGATGATATTATAAGTACACTGGTGTTGACATCTGTTTGATGTTCACCTTAACCAAGAGTAGATTTTTTGGGATGC
ATATATAGAAGAATCGTTTATTTTGTGTATATTGGACTGCTGATGTTGGACTGTTAGTTCAAAATAATATACGTCATACTTTTGAAATGGAGTAGGAAAG
CTCACGTGCTCCTTAAAAGTATACCGCACAGCCCCTTAAAAT