Detailed information on CNT30596437


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107470Oryza meridionalisOryza longistaminata53.5554.2997.91430forward

Expression of CNT30596437

Peptides detected in this lncRNA

>peptide 1 (47 aa)
QRRRLICFPAGREEAPRRRPWLHRAARFLAAGQLVCLLQNDTFFINR*

>peptide 2 (30 aa)
MFTERCYRTKENFVYALKFCLMMFDFLTQSG

>peptide 3 (30 aa)
MASPLQDSDIRRQKDKVVSSDGNGTIHFKP*

>peptide 4 (40 aa)
PAPSADLFPRRKGGGAAPTPMAPPRGALPRRRTASLFATE*

>peptide 5 (48 aa)
MVKCKPLVVLSKHFLHRKYWRISLFANLCLQKDATELRKTLCMHLSSV*

Sequence

>CNT30596437
CCCAGCGCCGTCGGCTGATCTGTTTCCCCGCAGGAAGGGAGGAGGCGCCGCGCCGACGCCCATGGCTCCACCGCGCGGCGCGCTTCCTCGCCGCAGGACA
GCTAGTTTGTTTGCTACAGAATGATACTTTCTTCATCAACCGATAGAAGCGTCTGCGCTACATTCTCCATGGAGTGCTGAGATGAGAACACATTTACTTC
AACTGTCTTTGACAACGATATTCTACAGTATTCGACTTCCTTCACGAGTTGTCTGCTAGAATTCAGGAAGAATTGGTAAATGTTGCAGCTTGGTTCTCAT
TGTTGGCCTTTTGCATATGGCATCTCCTTTACAAGACTCTGACATCAGGAGACAAAAAGACAAGGTCGTTTCTTCCGACGGTAATGGGACAATACATTTC
AAACCTTGAAAATTCGAGCACAAGAGTAACAGTTGATGACCGTTCAAGAAAAAGACAGTAACAGTTGATGCCCTCCGGCCCATAATTTCGTGTTGATCAT
CCTTTTTGATGCGAATATGTCAATGGCGATAAGGAAATGCATAATGATTTAATGAGCTGTAGACTTAACATTAATCTGGCCAGTCGTCGGATATGATTTC
TGAGACACTAATGTCAATATCTTTATCATGGTGAAGTGCAAACCTCTTGTAGTCTTGTCCAAGCATTTTCTACACCGCAAATATTGGAGAATCTCATTAT
TTGCTAATTTATGTTTACAGAAAGATGCTACCGAACTAAGGAAAACTTTGTGTATGCACTTAAGTTCTGTTTGATGATGTTTGATTTCCTGACACAATCA
GGG