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Detailed information on CNT30596421


BLAST search results

BLAST vs Swiss-Prot:
sp|Q71V89|H33_GOSHI, E-value = 1e-57

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697930Oryza meridionalisOryza sativa16.2426.1590.35114forward
CNT30675375Oryza meridionalisSetaria viridis16.2440.4398.25114forward
CNT30315797Oryza meridionalisCorylus avellana19.0920.2785.82134forward
CNT30700039Oryza meridionalisQuercus lobata18.6626.7987.02131forward
CNT30376827Oryza meridionalisArabidopsis thaliana18.6655.5183.21131forward
CNT3069232Oryza meridionalisQuercus suber14.3921.3185.15101forward
CNT30628401Oryza meridionalisVigna unguiculata18.2338.181.25128forward
CNT30200358Oryza meridionalisPisum sativum18.2320.5883.59128forward
CNT30709007Oryza meridionalisGlycine max16.8149.5884.75118forward
CNT30178172Oryza meridionalisSecale cereale16.2420.7798.25114forward
CNT30304662Oryza meridionalisTriticum aestivum18.9525.8395.49133forward
CNT30219843Oryza meridionalisHordeum vulgare17.2421.0897.52121forward
CNT30390922Oryza meridionalisTriticum turgidum13.5332.4292.6395forward
CNT30591253Oryza meridionalisMusa acuminata15.6735.2690.91110forward
CNT30508427Oryza meridionalisSolanum lycopersicum11.8223.9284.3483forward
CNT30443502Oryza meridionalisAegilops tauschii18.9521.4995.49133forward
CNT30240523Oryza meridionalisAvena sativa39.3244.0986.59276forward
CNT30657055Oryza meridionalisTriticum dicoccoides17.2423.1496.69121forward
CNT30259840Oryza meridionalisBrassica rapa19.848.186.33139forward
CNT30474628Oryza meridionalisSaccharum spontaneum21.0812.4595.27148forward
CNT30133877Oryza meridionalisLolium perenne20.0966.297.87141forward
CNT306284Oryza meridionalisZea mays12.3940.6595.487forward
CNT30606039Oryza meridionalisGossypium raimondii17.9526.5882.54126forward
CNT30686633Oryza meridionalisTriticum urartu12.6832.1398.8889reverse complement
CNT30719922Oryza meridionalisTriticum spelta40.8848.5685.71287forward
CNT30368649Oryza meridionalisSorghum bicolor20.2333.8188.03142forward
CNT30154413Oryza meridionalisPrunus persica18.2333.0785.94128forward
CNT30148402Oryza meridionalisBrachypodium distachyon40.658.0490.53285forward
CNT3099660Oryza meridionalisOryza rufipogon14.5322.5299.02102forward
CNT30583665Oryza meridionalisEchinochloa crusgalli20.6616.3594.48145forward

Expression of CNT30596421

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

>peptide 2 (31 aa)
MRRASWMSLGMMVTRLAWMAQRLVSSKSPTR*

Sequence

>CNT30596421
TAACATTTGATTTGAGTCTTTAACCGAACCCTGTTTTTACACTAATTAACCGACCAAACCCTATTACAAAGCTGCTGCTAAGGAAAACGAGATCTAAAAC
GCGGAACCGGGAGGGGAATCAACAAGTTGACCACGACACGTCGTCGTCTTTGATCCCCCAAAGATCGCTTCGGCGCTACGCAACGCAACCGCGTCGGAGG
CGGCGGATTAAGCGCGCTCGCCGCGGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTC
CTCGAAGAGCCCGACGAGGTAGGCCTCGGCNGATGCGGCGGGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTT
GGTGTCCTCGAAGAGCCCGACGAGGTAGGCCTCGGCGGCCTCCTGGAGGGCGAGCACCGCGTGGCTCTGGAACCTGAGGCGCTGGAAGGGGAGCTTGCGG
ATCAGGAGCTCCGTGCTCTTCTGGTACTTACGGATCTCACGGAGCGCCACCGTCCCCGGCCTGTAGCGGTGGGGCTTCTTCACGCCGCCGGTGGTCGGAG
CAGACTTCCTCGCCGCCTGCACAACAACAAACAACCCAAACCCCACGAATCAGAAAAAACCGCAAACCCTAACACCAGATCGAAAAGGAAGAAGGAGACG
AA