Detailed information on CNT30596393


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552695Oryza meridionalisOryza glaberrima29.125.5996.8250forward
CNT30106216Oryza meridionalisOryza longistaminata42.4977.6698.63365forward
CNT30100318Oryza meridionalisOryza rufipogon26.0860.2297.32224forward
CNT30576798Oryza meridionalisOryza barthii50.1743.1998.61431forward

Expression of CNT30596393

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MFAMCFLLEETDAYTVIFTVSSIFHDINNLCVRLKNIGLSSL*

>peptide 2 (68 aa)
APRPGNKSSSPEVWKKTSRGGGGGSGARRDPKATATATARLSHPAATFSPSQKAIVRHLEQSLMLYFM*

>peptide 3 (68 aa)
MTSTTYVYDLKTSDCHPCKTQRHLRTRTGRRGGSSLYPRAALYVRGRVHRSRHTHHHTSTSRCPLDPS*

>peptide 4 (54 aa)
RLGPGINHLVPRCGKKPREEAAAGAARGATRRRQRRRQHGSLIRPPPSLRHRRL*

Sequence

>CNT30596393
TGCGCCTCGGCCCGGGAATAAATCATCTAGTCCCGAGGTGTGGAAAAAAACCTCGAGAGGAGGCGGCGGCGGGAGCGGCGCGCGGCGCGACCCGAAGGCG
ACAGCGACGGCGACAGCACGGCTCTCTCATCCGGCCGCCACCTTCTCTCCGTCACAGAAGGCTATAGTTCGTCATTTGGAGCAATCACTGATGTTGTATT
TTATGTGATTAAAATGTGATGGTAGCAGCTTCATGAAGTACTTAAACTCTCATTTTGGGATATCCTAGGAGAAGTTTGGGTTTTGTTGTGTATTTAGACT
TCGCTAGTGCAACCTGTTTTGAGTTTGCTATGTGAGATACTTGGAAAGTGAAAAGACTTGTATTATTACCTTTTGTCTGCTGACAAGACATGTTTGCGAT
GTGCTTCTTGCTTGAAGAAACAGACGCATACACTGTTATCTTCACTGTTAGCAGTATTTTTCATGACATCAACAACTTATGTGTACGACTTAAAAACATC
GGACTGTCATCCTTGTAAGACTCAAAGACATCTTAGGACTAGGACGGGACGCAGGGGAGGTTCATCCTTGTACCCTCGTGCTGCTCTCTATGTGCGAGGA
CGTGTACACCGCAGCCGCCACACTCATCATCACACATCAACTTCACGCTGTCCTCTAGATCCGAGTTAGGGTTCTTGTCCTCCTCGCTGACTCGCCGCGT
TGGGGCGCGTCTATTTCCACTCCTTCAAACCGACGCAGTATCACCCCATAAGTCAGCCTCACCCCTCCCTTCTTCCCTCTCCCTTCTCTCTCTTCTTCAT
CCTCACTCCCCCTCTCTTCTTCCCTCTCCCCTCCTCTTTCTCTCTCTTCTTCTTCTCAG