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Detailed information on CNT30596372


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694010Oryza meridionalisOryza sativa23.1224.9496.54289forward
CNT30369939Oryza meridionalisOryza glumipatula18.440.5684.35230forward
CNT30106030Oryza meridionalisOryza longistaminata18.438.9884.78230forward
CNT30100598Oryza meridionalisOryza rufipogon18.437.2883.48230forward
CNT30116169Oryza meridionalisOryza nivara18.439.6684.78230forward

Expression of CNT30596372

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MILDTNNRSIILFSDYSXXXXXXXXXXXXXXXXMILDTNNRSIILFSDYSIGYIFIHFQFKSILVGTKMNTLHWPY*

>peptide 2 (37 aa)
MSYSTLWVNYIFYLFVSFLQVNYSFYIIAKYKCSKAL*

>peptide 3 (39 aa)
MAGRCCTAKTDAQGLSAGGSMVLTLELVFLYCKLLFFAG*

>peptide 4 (33 aa)
MERQLDLARTDGCSTAQDSNLFFMPFSIQQNLC*

Sequence

>CNT30596372
CTTGAAAATCCCTACTGATCTGCCCTGATTGATCAACATCCCGAACCCTGTATCCAAAATTAGTAACTTAATTTGTGCTCACGCGTGGCGAATTGTGATG
GCAGGGAGGTGTTGCACGGCAAAAACTGACGCACAGGGCTTGTCAGCAGGTGGGAGCATGGTCTTGACTCTCGAGTTAGTTTTTTTATACTGCAAATTAT
TGTTTTTTGCAGGATAGTGTAGATATATACTGATTGCTTTATTTTATCTACAGTTACTAGATTATTGTCTGGTAGCATGGAAATTTTTTTGGAGACATCT
TGCCGTATTAAAGGATTTCAAGAGAATATTTTTTTTATGAGAACTCGAGATAATTGAATAGCAATGGAGAGGCAGCTTGATCTGGCAAGAACTGACGGGT
GCAGTACTGCACAAGACAGTAACCTCTTTTTTATGCCTTTCTCCATTCAGCAAAATTTATGTTAAAATGATCTTGGACACAAATAATAGGAGCATCATTT
TGTTCTCAGATTATTCTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGATCTTGGACACAAATAATAGGAGCATCATTTT
GTTCTCAGATTATTCTATTGGTTATATATTTATACATTTTCAGTTCAAATCTATTTTAGTAGGAACCAAGATGAATACACTCCATTGGCCTTACTAAATT
ATAGTCAGGTAGTATTCCAAGTTATCATTAGTTCCTACAAGATCGGTGATGGGCTTGATTTTTTGCCCGCAAGGCCACAACAAGTTGGATGCAACACAAG
AGCTATTTCCGTATCTGTAAAGCTATTGCTGACACACTATCTAAATTGGTATGAGCTACAGTACTTTGTGGGTTAATTACATCTTTTATTTATTTGTTAG
TTTTCTTCAGGTTAATTACTCCTTTTATATCATTGCAAAATATAAATGTAGTAAAGCTCTCTAAATTTACAGGAAAGCATTCCTCATTCCTTAAACAAAA
TTTCTGGATCAATGGTGAGACAGATGAGACTGGTGCATCTGAAGACAATACCTGCGAATGTTGACGGGATCATCATCGTATAACAAAGGAATTTGTCCAC
TGCACCTCCAAGCACATACTTATAGATCGAGCGTTTAATTTTGACAGACATCAAGATGTTGGTTCTGTTTCAATGACTTAATTATTTAGCTGGATGCGGT
GAAAAAATTTTTATTATGTATTGCCATTGAATAAATGTGGCTGATTGTCT