Detailed information on CNT30596370


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30102291Oryza meridionalisOryza rufipogon44.2381.4999.4502forward

Expression of CNT30596370

Peptides detected in this lncRNA

>peptide 1 (74 aa)
PIPSITMPSPALALSSRTSPPMPAAALSPRVPSRDDTYVAPASPYGSRCAFLRPLACPRRDGVWILPRAVKVPY*

>peptide 2 (60 aa)
MPPPRRSVDPPPCSEGALLGRCRPVRRPYPNPSMSEAIVGSLMSSGKIRVLCKSGKFRLA*

>peptide 3 (34 aa)
DPIHHNAVACSSAILADLAPDARRRAIPACALAR*

>peptide 4 (35 aa)
MTPTWLPRVPTAAAALSYAPSHAPAATECGSSPVQ*

>peptide 5 (32 aa)
MWLFFAVFLLKSDFINQFKPALRCVTLGWLGS*

Sequence

>CNT30596370
CCGATCCCATCCATCACAATGCCGTCGCCTGCTCTAGCGCTATCCTCGCGGACCTCGCCCCCGATGCCCGCCGCCGCGCTATCCCCGCGTGTGCCCTCGC
GCGATGACACCTACGTGGCTCCCGCGAGTCCCTACGGCAGCCGCTGCGCTTTCCTACGCCCCCTCGCATGCCCCCGCCGCGACGGAGTGTGGATCCTCCC
CCGTGCAGTGAAGGTGCCCTACTAGGTCGCTGTCGTCCAGTCCGCCGACCATATCCCAACCCATCGATGTCTGAAGCTATTGTAGGTTCCCTTATGTCCT
CAGGGAAAATACGTGTACTCTGTAAGAGCGGAAAATTCAGGCTTGCTTAGCCACCCAAGACTCTGCCCCCTGCCTACTCCATCTCCAAGGAAGCTGCATG
CCTGGGCCACTGGTCTGGTTGGCTAGCGAGGATGGAGAGCACAGAGGAGTGACATGATTCCCATCCTCATTCTTTGGAGAGTTTGATAGGATAAAACTTT
GTACTTTAATTAGCTGGAATCTGGCCATACCCTTGAAGAGGACAAGGGAGCCACACACAAAAAAAATGTATTGGCAAGAGATGCTTTGCACTGGACAAAG
CATTGATCTTCTGTTTTCTTAAGTTTTTTTTTTCCAGAAACAGGATGTGGCTTTTTTTTGCCGTATTTCTGTTGAAGTCAGATTTCATAAATCAATTTAA
ACCAGCATTACGATGTGTCACCCTCGGATGGCTGGGAAGTTAGCTAGAAGCCGAGATTGAGCAGTATTTTTTGGCAGTAACTGCTAGGATGATGGACATG
TGCAGTGTGAAATCCCTTCCAGTGCCCAACTGCTAGGATGATGGACATGCTCATGGGATACCCCTTAAGACAACGACGTCGAGCACTATTCCGATAACAA
TTGGCTGGAGTACTATTATGAGACAATGTCCTAAAAGTAACTGAGATATAAACCTCTATGGTTTGCATACCATATAAACTTCTACTGGTCACACGATAGA
AGATATACACTTGCTGTTGATTATGTAAATGTTATATACTGAAGTACTATTTTGAGCACTTGCTGTTGATCATGTAAATGTTATATACTGAAGTACTATT
TTGAGACATTTTTTATAGAGTAAAGTGCACGGGCG