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Detailed information on CNT30596369


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521777Oryza meridionalisSetaria italica34.0511.996.8495forward
CNT30547549Oryza meridionalisIpomoea triloba26.169.4384.9373forward
CNT3069242Oryza meridionalisQuercus suber27.614.3792.2177forward
CNT30200079Oryza meridionalisPisum sativum25.4517.6685.9271forward
CNT3048083Oryza meridionalisPrunus dulcis36.5614.5384.31102forward
CNT30125320Oryza meridionalisPhyscomitrium patens26.527.6187.8474forward
CNT30184652Oryza meridionalisSecale cereale37.9931.3696.23106forward
CNT30398097Oryza meridionalisTriticum turgidum37.2813.5995.19104forward
CNT3084857Oryza meridionalisVigna radiata20.794.7287.9358forward
CNT30605939Oryza meridionalisGossypium raimondii21.5110.899060forward
CNT30622400Oryza meridionalisCajanus cajan21.156.4596.6159forward
CNT30418220Oryza meridionalisPapaver somniferum22.2214.4287.162forward
CNT3058538Oryza meridionalisAmborella trichopoda26.526.8685.1474forward
CNT30329187Oryza meridionalisDioscorea rotundata33.6924.2385.1194forward
CNT30114434Oryza meridionalisEutrema salsugineum30.1121.1189.2984forward

Expression of CNT30596369

Peptides detected in this lncRNA

>peptide 1 (38 aa)
KYGHKFGDKTDYFHCNFRITRGYIATKNLLLQHDKARI*

Sequence

>CNT30596369
AAATATGGACACAAATTTGGGGATAAAACAGATTACTTCCATTGCAATTTCAGAATAACCAGAGGTTACATTGCAACTAAGAATCTATTACTACAACATG
ACAAGGCGAGGATCTAATAATTAACAAGAACTAGTACCTACGAATCAAGCAAGAACCAAAGGAGGGGGGATCGCCTAAGCGCGCTCGCCGCGGATCCGGC
GCGCGAGCTGGATGTCCTTGGGCATGATGGTGACGCGCTTGGCGTGGATGGCGCACAGGTTGGTGTCCTCGAACAGCCC