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Detailed information on CNT30596367


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001117, E-value = 1e-150

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694393Oryza meridionalisOryza sativa10021.5397.37304forward
CNT30103502Oryza meridionalisOryza rufipogon10049.5197.04304forward
CNT30117067Oryza meridionalisOryza nivara70.7244.798.14215forward
CNT30550451Oryza meridionalisOryza brachyantha27.966.2591.7685reverse complement

Expression of CNT30596367

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MKNIAQLAHNRGHGYSNSFTLARGVPLYPQDTIPHMLPCPVIPPRHCKGGNRDNTLCTTQL

>peptide 2 (48 aa)
GPTILNNHTRLYRSNSKPGAKQIITRYNINNYCEWRETNHEKHCSTRP*

Sequence

>CNT30596367
CAGGCCCAACCATCCTGAACAACCATACCCGGCTGTACAGATCTAACTCCAAACCAGGAGCTAAGCAAATTATTACCAGGTATAACATCAATAATTATTG
TGAGTGGCGTGAGACTAATCATGAAAAACATTGCTCAACTCGCCCATAACCGCGGGCACGGCTATTCGAATAGTTTTACTCTGGCCAGAGGTGTACCACT
GTACCCACAAGACACGATTCCACACATGTTGCCATGCCCCGTAATACCACCACGGCATTGCAAAGGGGGAAATCGTGACAATACCCTTTGCACAACACAA
CTCA