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Detailed information on CNT30596363


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000983, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30694650Oryza meridionalisOryza sativa99.855.2994.671013reverse complement
CNT30371142Oryza meridionalisOryza glumipatula99.775.1394.471012reverse complement
CNT30109162Oryza meridionalisOryza longistaminata99.5158.3596.041010reverse complement
CNT30102110Oryza meridionalisOryza rufipogon99.3148.7294.051008reverse complement
CNT30576376Oryza meridionalisOryza barthii99.5137.9495.351010forward
CNT30115711Oryza meridionalisOryza nivara100.4943.4486.861020reverse complement

Expression of CNT30596363

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSPDAQIREHSYSNRFKDIHTAVDVRFTRSP*

>peptide 2 (36 aa)
MRSEHNIISSEMSSGVPEGFQRELDVRPHVISTRFS*

Sequence

>CNT30596363
CTCTAATGTTTTACTATAGAATTAAACCATCTAACTATACTAGACTTGAAGACTAGGTTTAAAGGGAACTAACTTATGTGATTGAACTCCCAGCTTTGGC
AAAAACTCCAAATAGACTCTGAAAAAGAGGGGTTGAAGCAAGGGTGAGTACAACGTACTCAGCAAGCTATTATATTATTCAACAATGAATGCATGAGAGG
TAATATCTGNGTNGAGCTAGGTTTACTTGCAGAAAGCTGAGAATAAAGAGGTAGAAATCCTGAAATGCTTGATATGCAACAGTATTTAAGAAAATCTTGA
ATTATATTTCTAACCAAAGTACCATATGAGTCCCGATGCTCAAATCCGTGAGCACAGCTATTCGAATAGATTCAAGGATATTCATACTGCAGTAGATGTA
CGCTTTACCCGCAGTCCATAACTTGCCAATAATCATTAGCTTAGTCATGGCCCAGTATTAAGTTACTAACAATAGTGGCACCTGTTCCATGAACTCGAGT
CCTCATGCGCTCTGAACATAACATTATCAGCAGCGAGATGAGTTCTGGCGTTCCCGAGGGTTTTCAGAGAGAACTGGATGTGAGACCCCACGTCATCTCA
ACCAGGTTTTCATAATTCACACGCACATCGCGCGATAATCAAGATATTTACCTGCGCCTCGGTAAATATCACATTTGCCCTTCTCGGCATAAGTTTGCCT
CCTTCGCGAGGACTTACATAAGAACCACTGTACAGAGGTACCACATTGTTAATTAACATAATATCTAGGTCTGTCCCCATTATAGAAGCTGCGGTCGTAC
TCGTTGGTTTGACATAAGTACTTGGTAAACTTATATCGACCGAGACAGTACTAGCCACCGGAAATCAACAAAATCTTACGTACTGTCCTAATCTAAGTTC
GTTATATTTTATGCAATCTAACTAGGCAGGGCTAAGAAAAAGGTAGCATATAACTGGTTTGCTATATGTTCATATTATGCATTCAAAATCATGAATGGCT
ATTGCATAGAATAGA