« Back to Oryza meridionalis search


Detailed information on CNT30596325


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30108499Oryza meridionalisOryza longistaminata33.2832.1393.27223forward
CNT30101628Oryza meridionalisOryza rufipogon22.3945.1894.67150reverse complement
CNT30576574Oryza meridionalisOryza barthii33.2824.0693.27223reverse complement

Expression of CNT30596325

Peptides detected in this lncRNA

>peptide 1 (80 aa)
GRRHRGSRALHDLRLPNPFRLLARRPRLPSPRLPLXXXXXXXXAAAERCTTSASPIRSVSSPAALDSRLLACRWCRSPSC*

>peptide 2 (99 aa)
RQATPRQQSAARPPPPQSVPSPRPPPSTPVSSPAAXXXXXXXXRGSRALHDLRLPNPFRLLARRPRLPSPRLPLVPISILLAEVAPGVLLLPPHRRSPG*

Sequence

>CNT30596325
TAGGCAGGCGACACCGCGGCAGCAGAGCGCTGCACGACCTCCGCCTCCCCAATCCGTTCCGTCTCCTCGCCCGCCGCCCTCGACTCCCGTCTCCTCGCCT
GCCGCTGGNNNNNNNNNNNNNNNNNNNNNNCGCGGCAGCAGAGCGCTGCACGACCTCCGCCTCCCCAATCCGTTCCGTCTCCTCGCCCGCCGCCCTCGAC
TCCCGTCTCCTCGCCTGCCGCTGGTGCCGATCTCCATCCTGCTAGCAGAGGTGGCGCCCGGCGTCCTCCTTCTTCCACCGCATCGTCGCTCGCCGGGTTA
GATCTGCCTCTGCCCAGCTCCACCTACTTTCAAGTTGTTAATTTTGATTTCCGTTTTTAGCAGATGTAATTTGGTTATTGAATCTCATCCAAACACCCTT
AGAACGAAAAATGTAAGCTCACATAATTTGTACTCATCCAAACTCACNNNNNNNNNNNNNNNAATTTGGTTACTGAATCTCATCCAAACACCCTTAGAAC
GAAAAATGTAAGCTCATCCAAACTCACATAAATTTCTTAAGAAGAATCTAGACCACAAACTACCCATAGTCACACAAAATATCTTTTTATCAAGGTATAT
TCTTATAAGTAATTTTTATTCCACAAAATTTTCTAAAGGACATACTGTGACACTTGGCATTAATCTAATT