Detailed information on CNT30596312


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000140, E-value = 6e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30157617Oryza meridionalisPistacia vera28.4620.6695.14144reverse complement
CNT30511493Oryza meridionalisSolanum lycopersicum37.7521.3697.91191forward
CNT30552519Oryza meridionalisOryza glaberrima22.733.7691.3115reverse complement
CNT30258698Oryza meridionalisAvena sativa26.2816.4698.5133forward
CNT3082633Oryza meridionalisBrassica juncea22.7334.9597.39115reverse complement
CNT30363124Oryza meridionalisSorghum bicolor16.63792.8684reverse complement
CNT30103824Oryza meridionalisOryza rufipogon21.1523.4187.85107forward
CNT30550626Oryza meridionalisOryza brachyantha26.6846.0897.04135forward

Expression of CNT30596312

Peptides detected in this lncRNA

>peptide 1 (41 aa)
ALRHFRCHGARPVSYYAFFKGWLLPSPPPSCHCSITSFSTK*

Sequence

>CNT30596312
AGCCCTGAGACATTTTCGGTGCCATGGAGCTAGACCAGTGAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTAGTTGTCATTGC
TCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGTTGTTTCCCTCTCGACTTTGGATCTTAGCACCCAGCTCCCTTG
TTGAAATTTTGATATTAAGGAAGCCGTATTTCGCAATAGCAGCTCCGAGAAGCTGGGCTTAGGGCGCGCCTCCTGCGGTCGTTTTTCTTGCATGTGGAGA
GATCGATCGATATATACCTGCGTATGTGCCTCACTTTGCTAGCTAGCTATACGTCGCAGTACTTTCGTACGTAGTATGTAGGTAGCACGACATATACTCC
CTCATTCCCTAAATGTTCGACGCAATTGACTTTTTTAAACATGTTTGACGGTTCGTCTTATTCAAAAACTTTTGTGAAATATGTAAAACTATATGTATAC
ATAAAA