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Detailed information on CNT30596300


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678474Oryza meridionalisSetaria viridis12.5642.6788.11227forward
CNT30553869Oryza meridionalisOryza glaberrima28.3396.2499.41512forward
CNT30445586Oryza meridionalisSaccharum spontaneum1427.4187.75253forward
CNT3067447Oryza meridionalisLeersia perrieri23.8576.2891.42431forward
CNT30351991Oryza meridionalisEragrostis tef1439.1688.93253forward
CNT30101622Oryza meridionalisOryza rufipogon28.5651.3499.61516forward
CNT30604101Oryza meridionalisOryza punctata16.8898.3996.07305forward

Expression of CNT30596300

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SEEFRIQSRSSMKLLETCMPKHGSVWRRLSN*

>peptide 2 (47 aa)
MTQLSPLKYTRCGKAHPLSKVKSLESLRRRSSDCAFPSGPACMSKSL*

>peptide 3 (63 aa)
MLSNQIPLCVIHAVVEVRNRDLHSPILLIVEFHMPVDSDRAHVRSTLDKRLTGPFARAINGRL*

>peptide 4 (74 aa)
MKRIGVSKKKKPPTHRTGATDTVRSSEAGGSHCPNLVVTTHKVSREPRRSGRRMDLRPARHELAGANREREGARA

>peptide 5 (35 aa)
MAPFGEGLAISMFEDVQEEVYPGQSIKCTPWNLTT*

>peptide 6 (87 aa)
MLGSSQLCHYKMMREIHSRKESSEQEIGSMCRWTHLTLRTISFPSTDYIFLLTLHIRCRWIFLNEQYKMHLLVWGCYLQHSHQESTT*

Sequence

>CNT30596300
TCTCTGAAGAGTTCAGAATTCAGAGCAGAAGTAGTATGAAGCTTCTTGAGACATGCATGCCAAAACATGGCTCCGTTTGGAGAAGGCTTAGCAATTAGCA
TGTTTGAGGATGTGCAAGAGGAGGTTTATCCAGGACAATCTATAAAGTGCACACCATGGAACCTGACAACTTGAAGCTCACCGAATTTCTTGGTTTCACT
CATCATGCATAAGCCAGCAAAGTAGCCAACACAATCGAAAATACCAAAGCCGAGAGTGTCAATGGTTGTTTTGTCAGAGGACTTGCATTAGGCAACCATG
GATATGCATCCGGAGGTGGCATGACACAATTATCACCATTGAAGTACACGCGGTGTGGGAAGGCCCATCCCTTGTCAAAGGTGAAGTCCTTGGAATCCTT
ACGCAGAAGAAGTTCTGACTGTGCATTTCCAAGTGGACCAGCTTGCATGAGCAAATCGTTATAGAACTTAACTCCCCAGAACATCGCAGTATCATCTAAA
ATAGAAGGAATAAACTTCATCAGAGAGAGAGAGAGAGATAAAGGAACATATTACAAGTGCACTCCAATTTTCTTAATAAAGGAGAACAGTTTGTAAATTG
ACTTACTTATCTTGCTTCCATATGGAGTAAGTGGCTTGTAGTTGAAGCTAAACAGCTGGGTGATATTATTGAAGTTGGGATGTTGAGCAACCAAATTCCA
CTGTGTGTAATTCATGCGGTAGTTGAAGTTCGTAATCGTGATCTTCACTCTCCAATACTCCTTATAGTTGAGTTTCACATGCCAGTGGATTCTGATCGGG
CACATGTGAGAAGTACATTGGACAAGAGGCTGACCGGTCCATTTGCCAGGGCCATCAATGGCAGATTGTAAATAAGCTTCCAGGACTTGTCCCATTGTTT
TGGCAGCCACAAGAGCATGTTGGGCAGTTCACAATTGTGTCATTATAAAATGATGAGAGAGATACACAGCAGGAAGGAGTCTTCTGAGCAAGAAATTGGG
AGTATGTGCAGGTGGACTCATCTCACTTTGAGAACAATCTCTTTCCCTTCAACAGATTACATCTTCTTACTAACCCTACACATAAGATGCAGATGGATTT
TTTTGAACGAACAATACAAGATGCATTTGTTGGTGTGGGGTTGCTACTTACAACATAGCCATCAGGAGTCCACGACATAACGTCCCATTTTATCGTGATG
TTTCCATTTGGATCCAGCGCATCATAAGCCTCTGCAAGAGGAAAAAAAAAAGAGTTGCATATCAAGATCCGGAACAAGAGAAACAAAATGGGGGTAAATT
AGCAGTTCGGCAGATGAATAAGCCCCATGAGTTAGTTATATCGTGATCCCGATTTCGATCTGGAAGGGAATTTTTTTCGAATTCGCCTCTCCTGATCAGA
TCTATCACCTTGGGCACTGTTTAGTGTGGGAAGGAAGCTCCAAGCGTGCTCCTCTCAGTGGATCTAAGCTACCTAACCTGATCCAAGAATCCGGTCAAGC
AGGAGCGAAACGAACTGAATTACTGCTACCTAATCTGCTCCAAGAGTTCGGGCAAGCATGAGCGAAACGAACTGAACTACTGATGAAACGAATCGGAGTT
TCAAAAAAAAAAAAGCCACCGACACACCGAACTGGAGCCACCGACACAGTCAGGAGCAGCGAAGCGGGGGGATCGCATTGCCCAAATCTCGTGGTCACAA
CTCACAAAGTTAGTCGAGAGCCTCGGCGATCGGGCCGGCGCATGGATCTGAGACCGGCACGGCACGAGCTGGCAGGCGCAAACAGAGAGAGAGAAGGAGC
GAGAGCC