Detailed information on CNT30596282


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693534Oryza meridionalisOryza sativa68.3760.5996.951379forward
CNT30370310Oryza meridionalisOryza glumipatula55.7375.3997.691124forward
CNT30108122Oryza meridionalisOryza longistaminata7.7325.3797.44156forward
CNT30101926Oryza meridionalisOryza rufipogon7.7324.5797.44156forward

Expression of CNT30596282

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MQDLVYFCIDDVMHQRWLHLTWKGTETIGKMWHFTSHRVTGKHAAL*

>peptide 2 (49 aa)
MLYSLLEFDTLRNFRIKICKTFPIHFCVKILQRSLQRMDANKLGMYSSI*

>peptide 3 (41 aa)
MKLLPHTWFRIKRRYGVFEKIHVCVSYVSKFISMLMNLNEG*

>peptide 4 (61 aa)
WAYTVWPTSGNEREANPHSSPSSGVRYGLVPLASRRCAGAAAMVDQIRVSLSPSSSSSSSS*

>peptide 5 (69 aa)
MLPSSCATDGRSQIANVLALWRSISFAECRVLAPKAMAMDSLELPNGCKNLWNRQVTPAFAGAVAVAQQ*

>peptide 6 (53 aa)
MQSPCSESDGHGLIRAPQRLQKLVESSGDTCVCRCSCSSTAIMQYIMEYDLMC*

>peptide 7 (61 aa)
MPIESSVASSMRTSSTAAIFLFQGRHATVLASSPLRLAESCISYRPLLLFFCLSSALPYAL*

Sequence

>CNT30596282
TTGGGCCTACACCGTGTGGCCCACATCGGGCAACGAGCGAGAGGCTAATCCACACTCTTCTCCTTCCTCCGGCGTACGGTACGGTCTAGTTCCCCTCGCC
TCGCGGCGGTGCGCGGGCGCGGCGGCAATGGTGGATCAAATTAGGGTTTCGCTCTCGCCCTCCTCCTCCTCCTCCTCCTCCTCGTAGCCTCCACACGGCG
CGGCTCGCAAGGTGCACATGCCCACTGATATTGGAGCAACATAGATGGTGAGGATAATGGAGTACATGAAGAATAAAGTGGGTGACAAGTGTTGGGAAGC
AGGAACATAGTGTTGGAGAGATCTTTGAGTCCAAAGCACAATGGTGTCGCGACTCGTGAACAGATGGTGCATATCATGTGGTGGGGGTGGTGATGCCGAT
TGAAAGCAGCGTGGCAAGTTCGATGCGGACATCTAGTACGGCAGCGATTTTTCTTTTTCAAGGTAGGCACGCCACCGTGCTAGCTTCCTCCCCTCTCCGT
TTAGCAGAATCATGCATTTCGTACCGTCCACTTCTCTTATTCTTCTGCTTAAGCTCTGCTTTGCCATATGCTTTATAGCCTGCTAGAATTTGATACCTTG
AGGAACTTCAGAATAAAGATTTGCAAGACGTTCCCCATCCATTTCTGTGTTAAAATCCTTCAGAGATCACTGCAGAGAATGGATGCTAATAAGCTTGGAA
TGTACAGTAGCATCTAGAAAACGAAGTGAAAATGGAGATGGATGCAGGACCTAGTTTATTTCTGCATTGATGATGTGATGCATCAACGATGGCTACACCT
GACCTGGAAAGGGACTGAAACCATTGGAAAGATGTGGCATTTCACATCCCACCGGGTCACTGGGAAACATGCTGCCCTCTAGCTGTGCCACAGATGGACG
GAGCCAGATCGCTAACGTTTTAGCACTGTGGCGGTCTATTTCTTTTGCAGAATGCAGAGTCCTTGCTCCGAAAGCGATGGCCATGGACTCATTAGAGCTC
CCCAACGGCTGCAAAAACTTGTGGAATCGTCAGGTGACACCTGCGTTTGCCGGTGCAGTTGCAGTAGCACAGCAATAATGCAGTACATTATGGAGTACGA
CCTCATGTGTTGAGAGGAGGGGCATCTTTGGAATCTCAGTGTACGAGAGGGGGAAGTATCCAGCAGCAGTGTTTGCTCAGACCCATAATTGACTGACCAT
CCCTTCCATTGGTTGCAACCCCAAGTGGCAGATTATTGTGCCTTTAATTGCCTGTTTCTTTGGTGTTCAGACTTGAGAAGACGCGCTGATCGTCGTTTTC
TTGGGGATGGGCCAGGTTAAGTTTCTGAGAGACTATTCAGACCTCACTGTTTGGCACTAAAAATTTTCAGCGAAAATACAGTTTTTGGTAGCTGAAAAAA
GCCGGTTCTTGCGCGACGGTGCTCTGATAAGTTCATTTGGTTGTGTTGCCGAGCGTACCAGATAATCCATGAAGTTTGTCATGAACTTTTCTGGGGAAAT
AATGATTGGTCAGCCATGAAACTGTTACCTCATACTTGGTTTCGCATTAAAAGACGGTATGGAGTTTTTGAAAAGATTCATGTATGTGTTTCATATGTGT
CTAAATTTATATCAATGTTAATGAATCTAAATGAGGGATGAAGAGACCAAAACGTCTTAGAATGTGATAGAATGTGAAACGAAGGGAGTACTATGATGCA
CATATATTTGCCACGGTGATGTTTACTCCCCTATCAAAAAAAAAATGTTTACTAACATGAAACAATACTCTGTCTGCATTATTTTTCCAAAAGAAAAAAA
ATAATAATAACTGCTCCTTTTTCAAGTGCGATATTTTGATAGAGGAAAAGTAGGGAGGCAACAACAGAAGTGGCAGATCTGGTGAGTGTTACATCTAATG
CTTTCTTAGTATTGCTTGACGTTGTCACTACCTTACTTTTCGACCCCCTGGCTATTTTTCATGTTATCTTCACGGAGCTATCAGTGTTATTCAAAGCACA
ACATAATTTCTTTTTCG