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Detailed information on CNT30596243


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003621, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696941Oryza meridionalisOryza sativa99.8254.5895.13554forward
CNT30554464Oryza meridionalisOryza glaberrima94.4117.9190.65524reverse complement
CNT30371012Oryza meridionalisOryza glumipatula93.6917.0890.96520reverse complement
CNT30107829Oryza meridionalisOryza longistaminata94.0529.2390.61522reverse complement
CNT30100517Oryza meridionalisOryza rufipogon63.7865.6892.09354forward
CNT30576894Oryza meridionalisOryza barthii92.4362.7191.62513reverse complement
CNT30604527Oryza meridionalisOryza punctata43.0675.8785.36239reverse complement

Expression of CNT30596243

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLLRPNHPEQLYPVVQIYLHTRNVPFQTRS*

>peptide 2 (31 aa)
MTYSTSHTANMQVHKDTKGWHNIGLICKSSI*

Sequence

>CNT30596243
TGTCACGCCCAGAAATTCACTAGTAATTTCCGAACTAATTTGTGCATAAAACCCTCGTCTAGGAATCAGCCGAGGTACACAAACTGATAATTTAATATAC
AAATCCATCAAAATAATAACGTTACATACTTACAAAAGAAAAGAAAACTGTAGCGGAATTACGGTCTAGCGAAGCTCCGGCTCCACTCCCACAGGCAGCT
CAACTGGAGTATAAGCCAAACGTCTTCTCCTTCGCAACTTGTCTTCAACTGAGGTTTGATTGATTATTGCAAGGTGAGCATATGACATACTCAACAAGCC
ACACAGCAAATATGCAAGTGCACAAGGATACCAAAGGATGGCATAATATAGGGCTCATTTGCAAAAGCAGCATTTAGCAAACATTTGAGAGTTAAAAAAT
AGTAGAGTAATTAATCATCAATTTTAATCAACACTGAACAGCACACCCATGCTGCTCAGGCCCAACCATCCTGAACAACTATACCCGGTTGTACAGATCT
ATCTCCATACCAGGAATGTACCATTCCAAACCAGGAGCTAATCAAATTATTACCA