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Detailed information on CNT30596242


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005064, E-value = 2e-125

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695129Oryza meridionalisOryza sativa14.8523.7989.849forward
CNT30554769Oryza meridionalisOryza glaberrima15.1522.429050forward
CNT30101354Oryza meridionalisOryza rufipogon15.1522.839050forward

Expression of CNT30596242

Peptides detected in this lncRNA

>peptide 1 (45 aa)
RHGLLSTVVVLSLAPFPPFQQRSISEMMALTSSSCLPSNVCGGPT*

Sequence

>CNT30596242
CCGACATGGCTTGCTTAGTACGGTGGTTGTACTCAGCCTTGCTCCTTTTCCCCCCTTCCAGCAGAGGAGTATTTCAGAGATGATGGCTTTGACGTCTAGC
TCGTGCCTGCCGTCAAACGTCTGTGGTGGCCCAACGTAGCTTCCGGTTTTTATCGTTTATCTTTCAGTGTTGGGCATTTGGTTGCCCATGTAATAAAGTA
CTTTATTTACGCTTCCGCTTATATACTTTGTTATTTATTAACTTTGTAATGTGTACCTTGCCTTTTGAGACAAGGAATCATGCACTCACAAACGAAATAT
AGTGTTCTATTTTCCGGGCGTGACAGTCAT