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Detailed information on CNT30596232


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000867, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696307Oryza meridionalisOryza sativa58.0565.2194.65523forward
CNT30371127Oryza meridionalisOryza glumipatula57.7138.5595520forward
CNT30103529Oryza meridionalisOryza rufipogon56.669.293.92510forward

Expression of CNT30596232

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MNRKEGKKGKFDRRREIWGIFLNSSFFLYISTGRYLMTLIGIGRD*

Sequence

>CNT30596232
ACTATAAATTTATAGTAATCGGAGTTCAAACGAAGTCCCGAGGATTGAATAGACGTGGGCCGTTAGATCTTGTTTAGTCTCTTTATATAACCAACCAAAA
AAACAAACGAAAAAAAAAGAGAAACAGGAGAATCGCCCCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTGTTCCTGTCTTCGC
CGGCGCCGCCGCTGGTGCAGCCGTCGCCGATCGCCACAGCCGTCGTCGTCCACAGCCGGTCGTTGGAAGGACGGAGAGAAGGCAGAGATGAACAGGAAGG
AAGGAAAGAAGGGGAAATTTGATAGAAGAAGGGAAATTTGGGGAATATTTCTAAATTCTTCGTTTTTCTTATACATTAGTACTGGTAGGTACCTAATGAC
ATTGATCGGCATAGGACGGGACTAGCACACTTGGACTACACATTATTATTGCACACAACTAAAATTTAGTTTGAGACTATTTTTTTGCTCAGCATAAGTT
TTGCATAGAACTTGTAAAGGTCATTTAAGGTTCTGATCCTTATTTTTTACGTGGGATTTGTGGAGGTAGGATGGTTTGGATTGTGTGGATTATATCGGTA
TTGACCTTTCTTATCACTGCCTGTCGTGGATGTCCGTATTTTTAGGGGAGACTGTCGAAATTTCTAATAATTTTGGGACTTAGTTTTTAAGTGTATTTTG
GTGTGGCATTGTAGGTACGTGGTTACCTGGGTGTTACAGGGCAGGCTTCACTCAAGGTGGAAAAAAAATGAAAACAGCAAATGTGTATTAATAATGAAAA
ATTGGATCCCCTATTACACACCCCTCGGGGTCTTTTTATAGTTTTACGACCCTAGAGTTTGGCCTGCCAGTGAATTTATATGATTGTCTCTTTGATGGAA
C