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Detailed information on CNT30596216


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693441Oryza meridionalisOryza sativa85.04100.1899.28557forward
CNT30553834Oryza meridionalisOryza glaberrima96.7993.6597.79634forward
CNT30101916Oryza meridionalisOryza rufipogon10095.6299.39655forward
CNT30576334Oryza meridionalisOryza barthii94.6698.7397.9620forward

Expression of CNT30596216

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MTLPAQYRFPKWMARLLVSDFQDLISRTRNLIMTSKQ*

>peptide 2 (37 aa)
FMYLKMKNDKILFFLNIALLLPIYIQSTEQLVILLCR*

>peptide 3 (32 aa)
MQIGKKNESKKLGKNYNNLLPTSDHFKAPNLN*

Sequence

>CNT30596216
TCTTTATGTACCTCAAGATGAAAAATGATAAAATACTTTTTTTCCTTAACATTGCACTTCTGCTTCCTATCTACATACAATCAACAGAACAGTTGGTGAT
TCTTCTATGCAGATAGGGAAAAAGAATGAATCAAAGAAGTTGGGCAAAAACTACAACAATCTACTTCCAACTAGTGATCATTTTAAAGCTCCAAACTTGA
ACTGAAGCAGCAAAATGATTACCGGGTGCTTACATGGAGAATGAATTTCATTAACAAATCTCAAATGCTCAACAATAGGTATTGTTGATCAACCGTGCCT
TGCTGCTCAGACTTCCAGCCTTCCAGCCTTCCTGATCCAGTCAATCTTACAGAGGATTAACCACAGTTTGTGTTGCATTGGTTATCACCGGAGACCTTAG
GACTTAAGCCTTGATGACATTACCAGCACAGTACCGATTTCCGAAATGGATGGCCAGGTTGCTGGTAAGTGATTTCCAGGATCTTATCTCTAGAACTAGA
AATCTCATCATGACATCGAAGCAATGAGATCCATACATGATGGGCCTTGTCCTCAGATCAACTGCCAAGCAATAATTGATTAAGAACAGTTGCATTATTT
TAACTCTTTACACTCATTGGATTTTCTTGGCTTCGTCTTGGATCTTCTCCACTTT