Detailed information on CNT30596213


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53NK6|MYBA1_ORYSJ, E-value = 1e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693836Oryza meridionalisOryza sativa56.4577.2490.42950forward
CNT30370278Oryza meridionalisOryza glumipatula57.5293.1790.81968forward
CNT30116769Oryza meridionalisOryza nivara33.8746.7691.75570forward
CNT30604122Oryza meridionalisOryza punctata18.4234.4882.9310forward

Expression of CNT30596213

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MDGCLMGRRYRGRGRHAVHVARSPATAQT*

>peptide 2 (52 aa)
MHLNQFIQSFRKKKKRIISCCQIGMKKKLNVMMRGWMDGLIYACVVHPVLHV*

>peptide 3 (51 aa)
MQHRMLINLRTSIPTTENGTFMCRHLNQFRVSDEYQFFFINMHLNQFQSSR*

>peptide 4 (34 aa)
MITDRGRRGGGEINQSRREKRKKKKQSMDGWMDV*

>peptide 5 (29 aa)
MCQGDRAIQRRKKKKKQKQMVNTSVSRAF*

>peptide 6 (34 aa)
MWVRQKFLISLSVRPGRLRAMRDQRLPHWEPGWR*

>peptide 7 (34 aa)
MHACLHLLIKYCIIHPSSTASRLINFHHATPHVN*

Sequence

>CNT30596213
AAAATCAGTCACAAGGTAGAACAGGTTAATTACAAACCACTTCATATTATGAAGCATACAAGCATAATACATATACCATGAAATTAAAGCAATATACATA
TAGCACTTGATCCCATCAGACTTAACTACTAATACTCTCTCCCCTACATGTACACAAGCTAGGCATGCTGATTGATCAAGCTATATAGCTAGATATATAT
AAAGCAGAGTCTGACAGCAGTGCATAATACGTGCATCATCAGGTGTAATTACAGTAGACAGATGCAAGGATATGCAGTGCAAATATAGATTTCGCAGTTC
GTTCATCATCATCCATCAGATGATGAGAGTCGTCGTCAGCTAATTAAGCTAAGAGCAGCAATTGAATTAAGGCGTTGTTTGCTTGTAATTCGAGTAGTAC
TATTGCGAGGCATCGAGCATCTTCTTGTAGTACTCCTCGTCGTCGATCCTCCACAGCGAGTAGTCGGTGCAGAATTCCCAGACCGGCGACGGCGGCGAGG
CCATCACCGCCGCCACCGCGTCGTAACAGCTCGTGTCGGCTTCCGCCGCCGCGATGTCGTTCCAGAGCTGGTCCATGGTGTAGTCCATCGTCTGCAGCTG
GCTCGCCGGCGTGGTTGCCGCCGCCACCAGCTGGTCGACGGCCTCGTCGTCGCCGCCGCAGCAGCTGCTGCTTTCTTGCAGCGCCGCCGCCGTCGCCATC
GTCGTGGTGGCCGTCGTCGTCGTGGAGGTGAGCGAGGAGGACAAGGATCCGGAGGAGGTCGTCGGCGCCGGCGATGGTGTATTGATCTTCTTCTTGGCGT
GGTGCGCGATCTTGCGCATGTGGGTTCGCCAGAAGTTCTTGATCTCGTTGTCGGTGCGGCCGGGGAGGCTGCGGGCGATGCGGGACCAGCGGCTGCCCCA
CTGGGAGCCGGGGTGGAGGTAGTTGACCCACCGGAGACGGCAGCTCTTGCCTGTGCGCTTCAAACCTGAAAGGTGAAACCACCAAGGCCAACATGTGCCA
GGGAGACAGAGCCATCCAGAGGAGGAAGAAGAAGAAGAAGCAGAAGCAGATGGTTAACACCTCAGTTTCCCGTGCGTTCTAAGCTCATGCATGCATGCCT
CCATCTCCTAATTAAGTACTGCATCATCCATCCATCATCGACCGCCTCTAGATTAATTAACTTCCATCATGCAACACCGCATGTTAATTAATTTACGCAC
ATCGATCCCCACAACTGAAAATGGAACATTTATGTGTAGGCATCTTAACCAATTCAGAGTTTCAGATGAATATCAATTTTTTTTTATCAATATGCATCTA
AATCAATTTCAGAGTTCCAGATAAAAAGAATCAATTATTGTGTTGATGCATCTAAATCAATTCATTCAGAGTTTCAGAAAGAAAAAAAAAAGAATCATTA
GCTGTTGCCAAATTGGTATGAAGAAGAAATTAAATGTGATGATGAGGGGATGGATGGATGGATTGATATATGCATGTGTGGTGCATCCGGTGTTGCATGT
GTGAATGATAACAGATAGAGGAAGAAGAGGAGGAGGAGAAATTAATCAATCAAGAAGAGAAAAAAGAAAGAAAAAGAAGCAGTCGATGGATGGATGGATG
GATGTTTGATGGGAAGGAGATATAGAGGGAGAGGGAGGCATGCAGTGCATGTAGCTAGGTCACCCGCCACCGCGCAAACCTGA