« Back to Oryza meridionalis search


Detailed information on CNT30596208


BLAST search results

BLAST vs Swiss-Prot:
sp|Q60E70|COBL3_ORYSJ, E-value = 8e-157

BLAST vs NONCODE:
NONORUT005134, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30105837Oryza meridionalisOryza longistaminata29.6383.8899.63536forward

Expression of CNT30596208

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MLGSSQLCHYKMMREIHSRKESSEQEIGSMCRWTHLTLRTISFPSTDYIFLLTLHIRWIFLNEQYKMHLLVWGCYLQHSHQESTT*

>peptide 2 (36 aa)
APWLISEEFRIQSRSSMKLLETCMPKHGSVWRRLSN*

>peptide 3 (47 aa)
MTQLSPLKYTRCGKAHPLSKVKSLESLRRRSSDCAFPSGPACMSKSL*

>peptide 4 (63 aa)
MLSNQIPLCVIHAVVEVRNRDLHSPILLIVEFHMPVDSDRAHVRSTLDKRLTGPFARAINGRL*

>peptide 5 (74 aa)
MKRIGVSKKKKPPTHRTGATDTVRSSEAGGSHCPNLVVTTHKVSREPRRSGRRMDLRPARHELAGANREREGARA

>peptide 6 (35 aa)
MAPFGEGLAISMFEDVQEEVYPGQSIKCTPWNLTT*

Sequence

>CNT30596208
TTGCTCCCTGGTTGATCTCTGAAGAGTTCAGAATTCAGAGCAGAAGTAGTATGAAGCTTCTTGAGACATGCATGCCAAAACATGGCTCCGTTTGGAGAAG
GCTTAGCAATTAGCATGTTTGAGGATGTGCAAGAGGAGGTTTATCCAGGACAATCTATAAAGTGCACACCATGGAACCTGACAACTTGAAGCTCACCGAA
TTTCTTGGTTTCACTCATCATGCATAAGCCAGCAAAGTAGCCAACACAATCGAAAATACCAAAGCCGAGAGTGTCAATGGTTGTTTTGTCAGAGGACTTG
CATTAGGCAACCATGGATATGCATCCGGAGGTGGCATGACACAATTATCACCATTGAAGTACACGCGGTGTGGGAAGGCCCATCCCTTGTCAAAGGTGAA
GTCCTTGGAATCCTTACGCAGAAGAAGTTCTGACTGTGCATTTCCAAGTGGACCAGCTTGCATGAGCAAATCGTTATAGAACTTAACTCCCCAGAACATC
GCAGTATCATCTAAAATAGAAGGAATAAACTTCATCAGAGAGAGAGAGAGAGATAAAGGAACATATTACAAGTGCACTCCAATTTTCTTAATAAAGGAGA
ACAGTTTGTAAATTGACTTACTTATCTTGCTTCCATATGGAGTAAGTGGCTTGTAGTTGAAGCTAAACAGCTGGGTGATATTATTGAAGTTGGGATGTTG
AGCAACCAAATTCCACTGTGTGTAATTCATGCGGTAGTTGAAGTTCGTAATCGTGATCTTCACTCTCCAATACTCCTTATAGTTGAGTTTCACATGCCAG
TGGATTCTGATCGGGCACATGTGAGAAGTACATTGGACAAGAGGCTGACCGGTCCATTTGCCAGGGCCATCAATGGCAGATTGTAAATAAGGACTTGTCC
CATTGTTTTGGCAGCCACAAGAGCATGTTGGGCAGTTCACAATTGTGTCATTATAAAATGATGAGAGAGATACACAGCAGGAAGGAGTCTTCTGAGCAAG
AAATTGGGAGTATGTGCAGGTGGACTCATCTCACTTTGAGAACAATCTCTTTCCCTTCAACAGATTACATCTTCTTACTAACCCTACACATAAGATGGAT
TTTTTTGAACGAACAATACAAGATGCATTTGTTGGTGTGGGGTTGCTACTTACAACATAGCCATCAGGAGTCCACGACATAACGTCCCATTTTATCGTGA
TGTTTCCATTTGGATCCAGCGCATCATAAGCCTCTGCAAGAGGAAAAAAAAAAGAGTTGCATATCAAGATCCGGAACAAGAGAAACAAAATGGGGGTAAA
TTAGCAGTTCGGCAGATGAATAAGCCCCATGAGTTAGTTATATCGTGATCCCGATTTCGATCTGGAAGGGAATTTTTTTCGAATTCGCCTCTCCTGATCA
GATCTATCACCTTGGGCACTGTTTAGTGTGGGAAGGAAGCTCCAAGCGTGCTCCTCTCAGTGGATCTAAGCTACCTAACCTGATCCAAGAATCCGGTCAA
GCAGGAGCGAAACGAACTGAATTACTGCTACCTAATCTGCTCCAAGAGTTCGGGCAAGCATGAGCGAAACGAACTGAACTACTGATGAAACGAATCGGAG
TTTCAAAAAAAAAAAAGCCACCGACACACCGAACTGGAGCCACCGACACAGTCAGGAGCAGCGAAGCGGGGGGATCGCATTGCCCAAATCTCGTGGTCAC
AACTCACAAAGTTAGTCGAGAGCCTCGGCGATCGGGCCGGCGCATGGATCTGAGACCGGCACGGCACGAGCTGGCAGGCGCAAACAGAGAGAGAGAAGGA
GCGAGAGCC