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Detailed information on CNT30596194


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693215Oryza meridionalisOryza sativa86.6759.1899.2377forward
CNT30676770Oryza meridionalisSetaria viridis15.8632.788.4169forward
CNT30520501Oryza meridionalisSetaria italica26.674.8394.83116forward
CNT30629601Oryza meridionalisVigna unguiculata20.2319.5184.0988forward
CNT30190473Oryza meridionalisSecale cereale26.4415.2393.04115forward
CNT30289517Oryza meridionalisTriticum aestivum62.7649.3788.28273forward
CNT30225926Oryza meridionalisHordeum vulgare26.4416.9490.43115forward
CNT30387764Oryza meridionalisTriticum turgidum62.7630.7888.28273forward
CNT30569510Oryza meridionalisActinidia chinensis15.1731.7392.4266forward
CNT30592144Oryza meridionalisMusa acuminata14.2526.9695.1662forward
CNT30553402Oryza meridionalisOryza glaberrima86.6772.0899.2377forward
CNT30436608Oryza meridionalisAegilops tauschii74.9445.3488.04326forward
CNT30254684Oryza meridionalisAvena sativa15.8630.6792.7569forward
CNT30657898Oryza meridionalisTriticum dicoccoides62.7637.3587.91273forward
CNT30612661Oryza meridionalisArabis alpina14.9422.4986.1565forward
CNT30139319Oryza meridionalisLolium perenne26.449.8395.65115forward
CNT30228928Oryza meridionalisAnanas comosus24.1426.9292.38105forward
CNT30653715Oryza meridionalisRosa chinensis31.0323.1685.19135forward
CNT30214941Oryza meridionalisHelianthus annuus17.730.284.4277forward
CNT30680357Oryza meridionalisTriticum urartu34.9453.5286.84152forward
CNT30370054Oryza meridionalisOryza glumipatula86.6772.0898.41377forward
CNT30109688Oryza meridionalisOryza longistaminata84.8369.6299.19369forward
CNT30331328Oryza meridionalisDioscorea rotundata62.7653.2281.32273forward
CNT30101372Oryza meridionalisOryza rufipogon86.675099.2377forward
CNT30576241Oryza meridionalisOryza barthii86.6756.8699.2377forward
CNT30116534Oryza meridionalisOryza nivara86.6787.2799.2377forward
CNT30604398Oryza meridionalisOryza punctata34.026.2685.14148forward
CNT30113851Oryza meridionalisFicus carica14.2522.3896.7762forward

Expression of CNT30596194

Peptides detected in this lncRNA

>peptide 1 (50 aa)
GRGSRGHCALGRWRRRRCRRGRRSCHRRPRRCRGCRRRRIGRRMTAPCTQ*

>peptide 2 (48 aa)
MPPKAQAMPRVPTPPHWSADDCTLYPMTVATVMYRNRSVAMNSAMSAR*

>peptide 3 (43 aa)
DVGVAGIALWVGGGEDGVDEDEDHATEGPGDAEGADAAALVGG*

Sequence

>CNT30596194
GGGACGTGGGAGTCGCGGGCATTGCGCTTTGGGTCGGTGGCGGAGAAGACGGTGTAGACGAGGACGAAGATCATGCCACCGAAGGCCCAGGCGATGCCGA
GGGTGCCGACGCCGCCGCATTGGTCGGCGGATGACTGCACCTTGTACCCAATGACGGTGGCGACGGTGATGTATAGGAACAGGAGCGTGGCGATGAACTC
CGCAATGAGCGCCCGGTAGAAGGACCACAGCCGGAGCTCGCCGACGTCGAACAGTGGCGCCGGCGGCGGGTCGGTGTAGTCCTTGGGCCGCACGTGCTCC
GGCTCCTCGCTCACCTCCTTCGACATTGCCGCTCCCTTCAGCAAGCTCAACACGCTACTCACTCTGAGCTAGCTTAGCTCTGCTCTCTCTTCTCTCCCTC
TCTCTTCTCTGATGGATGTGGAGAGGAGGGAAGCG