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Detailed information on CNT30596193


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553408Oryza meridionalisOryza glaberrima57.2557.2595.21438reverse complement
CNT30369462Oryza meridionalisOryza glumipatula33.33100.3996.47255reverse complement
CNT3099619Oryza meridionalisOryza rufipogon57.2576.9894.52438forward
CNT30578303Oryza meridionalisOryza barthii44.1884.593.79338forward
CNT30116624Oryza meridionalisOryza nivara57.2542.3295.43438forward

Expression of CNT30596193

Peptides detected in this lncRNA

>peptide 1 (90 aa)
TCYYEYSINSIKPYAGMLHPHPLKRDRRPRRSTPGQERPLLATSTSICPVPAHVPCCVTTPGLHQPCAPCLRNCDTCARETARVGSDTIL*

>peptide 2 (58 aa)
QLVITSILLILLSPMPGCYTLTPLREIDAPVDQPQARNVLSWPRPRPFVQCQRMCHAV*

>peptide 3 (44 aa)
MCPVPAHVPCCVTTPGLHQPCAPCLRNCDTRARETARVGSDTIL*

Sequence

>CNT30596193
CAACTTGTTATTACGAGTATTCTATTAATTCTATTAAGCCCTATGCCGGGATGTTACACCCTCACCCCCTTAAGAGAGATCGACGCCCCCGTCGATCAAC
CCCAGGCCAGGAACGTCCTCTCTTGGCCACGTCCACGTCCATTTGTCCAGTGCCAGCGCATGTGCCATGCTGTGTAACCACTCCCGGTCTACACCAGCCA
TGCGCACCATGCCTGCGCAACTGCGACACATGCGCCCGTGAAACCGCGAGAGTCGGCTCTGATACCATTTTGTAACGTCCCGCCTTCCCCCAGGCCGGGC
CCACTTACATCTAATAGCTTTCATAGGTCATAGACTGCCCTCACAGACCAACACGTCTTTTTTGCACACTTTGTCCTCACTCGTGTGCAGCCGGGAAGAA
TTTCCCGGTCGGTCACCCATCCCAAATTGCTCCAGGTTAAGCGAACGTCCTCTCTTGGCTACGTCTACGTCCATGTGTCCAGTGCCAGCGCATGTGCCAT
GCTGTGTAACCACTCCCGGTCTACACCAGCCATGCGCACCATGCCTGCGCAACTGCGACACACGCGCCCGTGAAACCGCGAGAGTCGGCTCTGATACCAT
TTTGTAACGTCCCGCCTTCCCCCAGGCCGGGCCCACTTACATCTGATAGCTTTCATAGGTCATAGACTGCCCTCACAGACCAACACGTCATAGACTGCCC
TCACAGACCAACACATGTCTTTTCTGCACACTTTGTCCTCACTCGTGTGCACCCGGGAAATTCCA