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Detailed information on CNT30596178


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30101469Oryza meridionalisOryza rufipogon88.3910099.22510forward
CNT30116486Oryza meridionalisOryza nivara10096.6598.96577forward

Expression of CNT30596178

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MRDIYAIKVMLALLRLHACNRDQYVIGWSV*

>peptide 2 (66 aa)
MDEACGQLAISKNKSYEAEIAALKNQNAALQMKIQALEKYRQAKHKEYAELETIYKKLKAKNSNCR*

Sequence

>CNT30596178
TTTAAGCGTACGTAGGAAGCGAGAAATATGCTAAGTTAGCCACTGAACTAGTGTTGTAGTTCTGCAAACAGAACTAGCTTCGATATATCTAGCTCAATAT
AATGGATGAAGCATGTGGTCAGCTAGCAATAAGCAAGAACAAATCGTACGAGGCTGAAATCGCTGCCTTGAAGAATCAAAATGCAGCCCTCCAGATGAAG
ATACAAGCACTGGAGAAATACAGGCAGGCTAAGCACAAAGAGTATGCAGAACTGGAAACCATATATAAGAAGCTCAAAGCAAAGAACAGCAACTGTCGTT
GATAAAATGGATTAAATTGTATATACCCTTGCATGTACCTACGTACTATTAGTGCATGGGAGTATACTATATATGTGTGTGCCGAGAATAAAGCTGTATA
CTGATCAAGCTATATCGTAGTAGTACGTCTAAACGTATGTAACCTGAATGCATGCGAGATATATATGCAATAAAGGTCATGCTAGCTCTCCTTCGTCTCC
ATGCGTGTAATAGAGATCAATATGTAATTGGCTGGTCAGTATAATCAGTGGATATAAAATAATTAATTTTATATGCG