Detailed information on CNT30596177


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696895Oryza meridionalisOryza sativa41.9965.3492.37262forward
CNT30553457Oryza meridionalisOryza glaberrima24.3622.2293.42152forward
CNT30370499Oryza meridionalisOryza glumipatula46.6340.393.47291forward
CNT30108388Oryza meridionalisOryza longistaminata23.882695.3149forward
CNT30102895Oryza meridionalisOryza rufipogon30.9338.0788.6193forward
CNT30575220Oryza meridionalisOryza barthii51.9220.1589.81324forward
CNT30115552Oryza meridionalisOryza nivara27.5637.1591.28172forward
CNT30551842Oryza meridionalisOryza brachyantha31.098.5689.18194forward

Expression of CNT30596177

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSGGREARSDSIECLKDLCWFSIFRFPVTRLNLG*

>peptide 2 (40 aa)
MLLVKLCIRCSKKNPFAHQQEGLAVIQSSICYEWRTRSKE*

>peptide 3 (66 aa)
HHHRCHVLPPPPPPLPPPPSCRRLRAIPPLPPRRAIAVAKRGLQGGRGESGECDHHHCRHALWAHG*

>peptide 4 (74 aa)
SSSPLPRAAPSASTSTAAAVMSPSPSDSASASSSRHCRRQARASRRTRRKRGVRPSSLSTCPVGAWLRPSAYAA*

>peptide 5 (82 aa)
IIITVATCCPLRLHLYRRRRHVAVSERFRLCLLVAPLPSPSAGFKADAEKAGSATIITVDMPCGRMAEAICICCMNSSSVCL*

Sequence

>CNT30596177
ATCATCATCACCGTTGCCACGTGCTGCCCCCTCCGCCTCCACCTCTACCGCCGCCGCCGTCATGTCGCCGTCTCCGAGCGATTCCGCCTCTGCCTCCTCG
TCGCGCCATTGCCGTCGCCAAGCGCGGGCTTCAAGGCGGACGCGGAGAAAGCGGGGAGTGCGACCATCATCACTGTCGACATGCCCTGTGGGCGCATGGC
TGAGGCCATCTGCATATGCTGCATGAACTCAAGCTCTGTCTGTCTCTAGTACGGGATGGATGTTGCTGGTCAAGCTATGTATAAGATGTAGCAAAAAAAA
TCCATTTGCACATCAACAAGAAGGCCTTGCTGTAATTCAATCCTCTATTTGCTATGAGTGGAGGACGAGAAGCAAGGAGTGATTCCATTGAATGTTTGAA
AGATTTGTGTTGGTTTTCTATTTTCAGATTTCCTGTAACTAGGTTGAATCTAGGATGAACTATTGTTTGAATTCTGTTGTATTCTGATTGTATATGTTAT
TAGTTAAATCTGAGATGGTATCTGTAATTAGGTTTGAATCTGAAATGGTATGAGAAATTGGATTGAATTTGGTGGGCTCAAATTTAATGGGTCTGTTTAG
TGGGCTTTGATTTGATAGTTGGTT