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Detailed information on CNT30596127


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180942Oryza meridionalisSecale cereale29.9220.3890.16193forward
CNT30385545Oryza meridionalisTriticum turgidum29.1519.2290.43188forward
CNT30240769Oryza meridionalisAvena sativa29.1524.0487.77188forward
CNT3081457Oryza meridionalisBrassica juncea8.6825.9389.2956forward
CNT30601253Oryza meridionalisFraxinus excelsior13.9539.1385.5690forward
CNT30466191Oryza meridionalisSaccharum spontaneum30.8528.7689.45199forward
CNT30132778Oryza meridionalisLolium perenne29.4623.988.95190forward
CNT3017302Oryza meridionalisZea mays30.727.7388.89198forward
CNT3067371Oryza meridionalisLeersia perrieri49.1542.1591.48317forward
CNT30342484Oryza meridionalisEragrostis tef29.7729.9591.15192forward
CNT30107264Oryza meridionalisOryza longistaminata97.5283.3194.59629forward
CNT30585288Oryza meridionalisEchinochloa crusgalli23.8830.5692.86154forward
CNT30603959Oryza meridionalisOryza punctata84.0370.9493.73542forward

Expression of CNT30596127

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MNWIGRKIHLYNVTVGLYMLDWWERYLFNILMLCLLWYILRYVLGFFQSNLKTILQGGNYLVQGRKLQ*

>peptide 2 (43 aa)
MFITEKPFSIPSLDAAGLWWSCTCVCEKLMFVVIWTHCRHIVL*

>peptide 3 (36 aa)
TNKPFSSFASTTPWSCDCSPSENLTPLRGAAPSLRI*

Sequence

>CNT30596127
TACAAATAAGCCCTTCTCTTCGTTCGCATCTACTACTCCTTGGAGTTGCGACTGTTCCCCCTCTGAAAATCTGACACCCCTCCGCGGCGCCGCTCCCTCC
CTCCGGATCTGAGCGAGGTGATCTACAGGTCTCGGGTTTCTCGTGGAGGATGAACTGGATTGGGCGCAAGATCCACCTCTACAATGTCACCGTCGGTCTC
TACATGCTCGATTGGTGGGAGCGCTACCTCTTCAATATATTGATGCTTTGCCTTCTATGGTACATTCTCCGGTATGTCCTTGGGTTCTTTCAGAGTAACC
TGAAGACCATTTTGCAAGGTGGGAACTATCTTGTGCAGGGCAGGAAATTGCAGTAAGCAAGTGAGATATTTTGACCAGTTTTAACATGTAATTCACCTGT
TTATTTAGTTGTAAACTGAGCAACCAGAGAGGAACTGATGAGGTATGTTTATTACTGAGAAGCCTTTTTCTATTCCTTCTCTAGATGCTGCAGGTCTTTG
GTGGTCGTGTACTTGTGTATGTGAAAAATTGATGTTTGTTGTAATTTGGACCCATTGCCGTCACATTGTTTTATGAGAAAACCGCATTAGTATGCCAAGT
ATTTGCAATTCTCTACCCTGAATTTCAGATTGGATTCGACCATTT