« Back to Oryza meridionalis search


Detailed information on CNT30596122


BLAST search results

BLAST vs Swiss-Prot:
sp|O23755|EF2_BETVU, E-value = 4e-119

BLAST vs NONCODE:
NONGMAT000778, E-value = 2e-34

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674834Oryza meridionalisSetaria viridis35.438.2288.98245forward
CNT30640184Oryza meridionalisNymphaea colorata40.937.3881.63283forward
CNT30532226Oryza meridionalisEucalyptus grandis40.753986.17282forward
CNT30316236Oryza meridionalisCorylus avellana35.9854.2583.94249forward
CNT30547574Oryza meridionalisIpomoea triloba17.6334.3786.89122forward
CNT30512729Oryza meridionalisJuglans regia48.4132.5682.69335forward
CNT30371838Oryza meridionalisArabidopsis thaliana92.7748.6780.69642forward
CNT30276060Oryza meridionalisChenopodium quinoa46.6850.9584.21323forward
CNT30379936Oryza meridionalisManihot esculenta27.1756.2987.77188forward
CNT30405825Oryza meridionalisBeta vulgaris11.1333.6285.7177forward
CNT30488117Oryza meridionalisOlea europaea25.4336.0782.39176forward
CNT30711584Oryza meridionalisGlycine max40.6139.9183.99281forward
CNT3045373Oryza meridionalisPrunus dulcis42.237.2482.88292forward
CNT30191206Oryza meridionalisSecale cereale5028.2792.77346forward
CNT30300473Oryza meridionalisTriticum aestivum50.4336.0590.54349forward
CNT30224354Oryza meridionalisHordeum vulgare50.1466.8690.78347forward
CNT30395070Oryza meridionalisTriticum turgidum5045.2393.06346forward
CNT30561656Oryza meridionalisActinidia chinensis47.1123.2983.74326forward
CNT30510505Oryza meridionalisSolanum lycopersicum48.9931.2285.25339forward
CNT30441158Oryza meridionalisAegilops tauschii50.4345.9890.54349forward
CNT30309793Oryza meridionalisCamelina sativa39.635.2283.58274forward
CNT3059659Oryza meridionalisArabidopsis lyrata31.6550.4682.65219forward
CNT30612508Oryza meridionalisArabis alpina85.8423.481.31594forward
CNT30135610Oryza meridionalisLolium perenne33.2427.1989.13230forward
CNT30605685Oryza meridionalisGossypium raimondii48.9944.3784.66339forward
CNT30683923Oryza meridionalisTriticum urartu5037.8192.2346forward
CNT30345702Oryza meridionalisEragrostis tef39.1633.5488.56271forward
CNT30359537Oryza meridionalisLactuca sativa37.5739.4580.38260forward
CNT30370118Oryza meridionalisOryza glumipatula34.2538.3599.58237forward
CNT30153558Oryza meridionalisPrunus persica16.1833.1481.25112forward
CNT30705326Oryza meridionalisPrunus avium31.516.9682.57218forward
CNT30332479Oryza meridionalisDioscorea rotundata17.242.0583.19119forward
CNT30149525Oryza meridionalisBrachypodium distachyon16.7638.4188.79116forward
CNT30575986Oryza meridionalisOryza barthii50.4329.5599.71349forward
CNT30497701Oryza meridionalisDigitaria exilis32.869.8587.67227forward
CNT30604019Oryza meridionalisOryza punctata41.0484.0298.94284forward

Expression of CNT30596122

Peptides detected in this lncRNA

>peptide 1 (81 aa)
ASLLVQNTIDTTKGILRCLDLHQVDWLQQPWLRSELRSIDDPPRCRNDLATAPVNSISVENHITYLEADAAHVLLSQCTFF*

>peptide 2 (34 aa)
GLSSGSEHHRYHQGHSQVPGSPPGRLAPAALASQ*

>peptide 3 (64 aa)
MSTTMLGPVVSGPCPTQTPQTGSWTAPWDHHVGQYVHRRWPRPVPPPRGELPCKDGCACSGICS*

>peptide 4 (30 aa)
MPRMFSSANAPSFDAHWNPATTESLISLRY*

Sequence

>CNT30596122
GGCCTCTCTTCTGGTTCAGAACACCATAGATACCACCAAGGGCATTCTCAGGTGCCTGGATCTCCACCAGGTAGACTGGCTCCAGCAGCCTTGGCTTCGC
AGTGAGCTGAGAAGCATAGATGACCCTCCTCGCTGTCGGAATGACCTGGCCACCGCCCCTGTGAATAGCATCAGCGTGGAGAACCACATCACATACCTCG
AAGCAGATGCCGCGCATGTTCTCCTCAGCCAATGCACCTTCTTTTGATGCCCACTGGAACCCAGCCACAACAGAGTCCTTGATTTCATTAAGATACTGAA
CTCCCTTACACATGTCGACCACCATGTTGGGGCCAGTGGTCTCAGGTCCTTGTCCCACCCAAACTCCTCAGACAGGATCTTGGACCGCACCTTGGGATCA
TCACGTGGGCCAATACGTCCATCGTCGATGGCCTCGGCCAGTCCCTCCTCCAAGGGGCGAGCTTCCATGTAAAGACGGTTGTGCTTGTTCGGGGATTTGC
TCATAACTGTGCGGCAGGACTTCTCAAGAACAGTCTCACGGAAGGAGACAACAGGAGGGGAAACAATAATCTCAGCACCACCCATGAAGTCTTCCTGTAG
ATCCTTCAAGCAGATTTCAAGGTGAAGCTCTCCAGCTCCAGCAATGATATGCTCACCGGACTCCTCAATGGTACAGAGGACCATAGGATCAG