Detailed information on CNT30596085


BLAST search results

BLAST vs Swiss-Prot:
sp|Q96520|PER12_ARATH, E-value = 2e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693017Oryza meridionalisOryza sativa25.5630.5896.81408forward
CNT30179783Oryza meridionalisSecale cereale15.8530.2684.19253forward
CNT30290573Oryza meridionalisTriticum aestivum4.726.4185.3375forward
CNT30221586Oryza meridionalisHordeum vulgare5.7645.185.8792forward
CNT30590929Oryza meridionalisMusa acuminata5.1421.2485.3782forward
CNT30553544Oryza meridionalisOryza glaberrima23.1252.2798.64369forward
CNT30342803Oryza meridionalisEragrostis tef5.8323.3191.493forward
CNT30370179Oryza meridionalisOryza glumipatula17.7982.3293.31284reverse complement
CNT30101479Oryza meridionalisOryza rufipogon51.6378.9397.69824forward

Expression of CNT30596085

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVVGRACGKQSWKKMRTRPAAMPMSRRRASVTCHLTMPSTDGQVVS*

>peptide 2 (60 aa)
MASRVASVVMSAQDTLAPQAECTAARMSSMSFSADGRSVWLGISPSSLWEPVRRTDASHP*

>peptide 3 (74 aa)
MMGLEPSKRSLKLPQWPRPMVCAPDSATRSVLSRFRSLNDWMSVGTSKKGAGRRPTLSLDAGASPSRRPRGTSK*

>peptide 4 (31 aa)
METIHHADGILLIIITSTEHKHKTITNYSIS*

>peptide 5 (34 aa)
ILGLCCDKDSCDDVALTDDDTFDMQLLCPDRGIE*

>peptide 6 (44 aa)
MERANWSKKAAWLRAKRTAVRLVCASSMRPWSDLKMPCLAMRSK*

Sequence

>CNT30596085
AATTTTGGGTTTATGCTGTGACAAAGACAGTTGTGATGATGTAGCACTAACTGATGATGATACATTTGACATGCAGTTACTCTGTCCCGACCGAGGAATC
GAGTAGTAACTTTACTTTTTATGAAGCAAAACCATTCTAACTAAGCAGAGAATGCATGGAAACCATACACCACGCAGATGGCATCCTCTTAATTATTATT
ACTAGCACAGAACATAAACACAAAACGATCACTAATTACTCCATAAGTTAATTAGGCGTCGGCGGCGAAGCCTTTGTCGTCGGCGTCGGTGAGGAGGTCG
GAGGAGCGGCGGTTGGGGGCGGCGCAGTTGTTGCGGATCTCGCCGGCGTTGCCGGTGAGGACGTCCATCTGGCTCATCTTGACCATGGAGCGGGCGAACT
GGTCGAAGAAGGCGGCCTGGTTGAGGGCGAAGCGGACGGCGGTGCGGTTGGTCTGCGCGTCCTCGATGAGGCCCTGGTCGGACTTGAAGATGCCCTGCTT
GGCGATGAGGTCGAAGTAGTACTTGTTGTCGAAGGCGTTGGGCGTGCGGACGTCCAGCTCCTGCGTGACCGAGTTCACCGGGACGTCCTTGGCGCACTTG
GCCTGCAGCTTCTTCACCAGCACCGGGTCCATGATGGGCTTGGAGCCATCGAAGCGGTCGTTGAAGCTGCCGCAGTGGCCTAGGCCGATGGTGTGCGCGC
CGGACAGCGCCACCAGGTCCGTCTTGTCCAGGTTTCGGTCCTTGAACGACTGGATGAGCGTGGGCACGTCGAAGAAGGGCGCCGGCAGGAGGCCCACCTT
GTCGCTCGACGCCGGTGCCAGCCCGTCGCGCCGCCCCAGAGGCACGTCGAAGTAGGGCCCGCCGGACTGCATATATATATATCCATGTAATTAAAAAATC
CCAATCCCAACAGTTTAGTTAAGAGATCATTAGTAGTACTAATAATTAAGAATTAGACGTACGGCGACGATGGCGTCACGCGTGGCGAGCGTGGTGATGT
CGGCGCAGGACACCTTGGCGCCGCAGGCGGAGTGTACGGCGGCGCGGATGTCCTCGATGAGCTTCAGCGCCGACGGCCGCAGCGTCTGGTTGGGTATCTC
ACCCAGCTCGCTTTGGGAACCCGTCAGGAGGACCGACGCGTCGCACCCCTGAACACTTAATTAATTCAGAATGTTAATATACTACTGTAGTTACTAAAAC
TCGGTATTTAATTTGTTTTTTTTTATATATATTGCCATCTGTAAGAAGGAGGCATCATGCATCAGCCGGCAACTACTGGAGTAAAATGGTAGTAGGACGT
GCCTGCGGGAAGCAGTCGTGGAAGAAGATGCGGACGAGGCCGGCGGCGATGCCGATGTCGCGGCGGAGGGCCTCGGTGACGTGCCACCTCACGATGCCCT
CAACCGACGGGCAAGTGGTGTCATAGAACCCCCAGGACAGCCCGGCCACCACGTGCTCGCCGGTGGTCACCACGGCCGCGCAACGGGCAGCAAAGAGGCC
CGACATCAGTAGCACAACCATGCCCAGCTTGGACGCCATTGCTCCACACTACTGTATCTACCTAAGCTAGCTAACACTCAGCTCGACCTCTGCCTG