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Detailed information on CNT30596075


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692932Oryza meridionalisOryza sativa46.8229.6295.2250forward
CNT30553335Oryza meridionalisOryza glaberrima46.8236.3995.6250forward
CNT30370058Oryza meridionalisOryza glumipatula46.8242.395.6250forward
CNT30109643Oryza meridionalisOryza longistaminata47.7539.0594.9255forward
CNT30101323Oryza meridionalisOryza rufipogon46.8240.0694.8250forward
CNT30576161Oryza meridionalisOryza barthii46.8236.2895.6250forward

Expression of CNT30596075

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MWQAASVYLSFVCSCCLIVLYFNLYGCTQIIL*

>peptide 2 (64 aa)
REGEVPPCYLLVSSLLSKFEKARNIYMHACLYHEFMRKHGYLALLLHALVLISRCMHGIIVNPD*

>peptide 3 (41 aa)
ERERFLPATSWSPLFYPSLRRPEIYICMLAYIMSSCASMDI*

Sequence

>CNT30596075
CAGAGAGGGAGAGGTTCCTCCCTGCTACCTCCTGGTCTCCTCTCTTCTATCCAAGTTTGAGAAGGCCAGAAATATATATATGCATGCTTGCTTATATCAT
GAGTTCATGCGCAAGCATGGATATCTAGCTCTATTACTGCATGCATTGGTGTTAATTAGTAGGTGCATGCATGGCATCATCGTCAATCCTGATTGATGTT
TTGAACAACTGGTTATGTCTTTCACTTCATGCACGCGTGCGTAAATGAAGTGCTCACTACTGCTCAGGCAGCTAGCTAGCAGTGGCGGCTGGAGCCATGC
ACATTGCTGATAGAGGCCGGCGAACGGCATTGTTGCCGGCTGGAGAGAGCTAGGATAGAAGAACAAAAAAATGGGTCATGTGGCAAGCAGCTTCTGTTTA
TTTATCTTTCGTTTGTTCATGCTGTTTGATTGTTCTCTACTTTAATTTGTACGGTTGTACCCAGATCATTTTGTAGTTGCAGGCATTAACTACGTACTCT
GCGGTGTTGAAATCTATGGAACTTCGTTTACGAG