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Detailed information on CNT30596064


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675350Oryza meridionalisSetaria viridis25.7863.4691.67132forward
CNT3019597Oryza meridionalisCitrullus lanatus25.217.2584.5129forward
CNT30728649Oryza meridionalisCorchorus capsularis26.1712.384.33134forward
CNT30405832Oryza meridionalisBeta vulgaris48.2430.880.16247forward
CNT3085191Oryza meridionalisVigna radiata26.7619.1185.4137forward
CNT30552635Oryza meridionalisOryza glaberrima10049.3399.22512forward
CNT30143941Oryza meridionalisMedicago truncatula47.2754.0283.06242forward
CNT3014085Oryza meridionalisZea mays70.5159.1887.26361forward
CNT30722731Oryza meridionalisTriticum spelta43.9544.0385.33225forward
CNT30361520Oryza meridionalisSorghum bicolor49.6137.1387.8254forward
CNT30369654Oryza meridionalisOryza glumipatula72.2742.0598.92370forward
CNT30154011Oryza meridionalisPrunus persica21.2938.7983.49109forward
CNT30107537Oryza meridionalisOryza longistaminata10055.7199.22512forward
CNT30100253Oryza meridionalisOryza rufipogon10046.4699.22512forward
CNT30575129Oryza meridionalisOryza barthii10062.999.02512forward
CNT30116094Oryza meridionalisOryza nivara95.3155.4599.8488forward
CNT3050899Oryza meridionalisCucumis sativus25.7852.3882.58132forward

Expression of CNT30596064

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MKYDNESSSLSSRPTRTCKGNGTTHAAAKNLELVLEIGEGSHLLLETLPLADILHQG*

>peptide 2 (32 aa)
MSQWSNTHWGKAWPDVAALSWLENPKDSMTGR*

Sequence

>CNT30596064
CTCAGTAACACGCGAACATACGATTTGTTGATGTGAAACACATGCATTCGACAAAAGGGAAATGAAATACGACAACGAAAGCAGTTCTCTTAGCAGTAGA
CCAACTAGAACATGTAAGGGTAACGGCACAACACATGCGGCGGCCAAAAATTTAGAGCTTGTCCTCGAAATCGGAGAGGGGAGTCATCTGCTCCTTGAGA
CCCTTCCTCTTGCGGATATCCTGCACCAGGGTTGAAGCCTGCGAGCCGGCTTCAAGAGGATCAGAGGTCATCATGTCCCAATGGTCGAACACACACTGGG
GGAAGGCCTGGCCAGATGTCGCAGCCCTAAGCTGGCTTGAGAACCCAAAGGACTCGATGACAGGGAGGTAAGCCTTGATGTTGTACAGAGGGGTACCAGG
TAGACGGGCTCAAGAAGCCTGGGCTTTGCTGTGAGCTGAGAAGCATAGATGACCCTCCTGGCCGTGGGAATGACCTGGCCACCACCTCTGTGAATAGCAT
CAGCATGGAGAA