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Detailed information on CNT30596058


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RU61|ATPH_ATRBE, E-value = 4e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30506790Oryza meridionalisNicotiana attenuata14.0820.8990.55127forward
CNT30553466Oryza meridionalisOryza glaberrima28.649.4399.22258reverse complement

Expression of CNT30596058

Peptides detected in this lncRNA

>peptide 1 (38 aa)
EILFSFARWTLNPNRVVRFHLRTTFTKVKNLRPTKTGS*

Sequence

>CNT30596058
GAAATCCTCTTTAGCTTTGCGCGTTGGACTCTAAATCCTAACAGAGTGGTTCGATTCCACCTCAGAACGACCTTCACGAAAGTGAAAAATCTTCGTCCTA
CCAAAACCGGATCTTGAAAAGTGTTCAGTGCCCAACAAGCAACGGGTTGAGCGCACTAGCGCGAAAGCGTTAGCACGCGCATCCNNNNNNNNNNNNNNNN
NNNNNNNNNGACCTTCACGAAAGTGAAAAATCTTCGTCCTACCAAAACCGGATCTTGAAAAGTGTTCAGTGCCCAACAAGCAACGGGTTGAGCGCACTAG
CGCGAAAGCGTTAGCACGCGCATCCGTTTTCTTGCTCCATAAGAAGCACTAGTACTTTTCCACGGAAGGCGCGGGCGTTGAAGCAAGGAATATAAGCTCG
GGTAGGGTTCNTTGAGCGCACTAGCGCGAAAGCGTTAGCACGCGCATCCGTTTTCTTGCTCCATAAGAAGCACTAGTACTTTTCCACGGAAGGCGCGGGC
GTTGAAGCAAGGAATATAAGCTCGGGTAGGGTTCCGAGGACCACTAGTCGTTTCATTCGTTCCTGCCGCACCGGATTGAGCTGTCCAAGAAGCTAGGTCT
TTTTCGGGGAAATAAGTTGTTTCTGCTACTGAACCAACTAGTCAAACTAGGCATTCCACTAATTGCTGCTNNNNNNNNNNNNNNNNTTGAGCTGTCCAAG
AAGCTAGGTCTTTTTCGGGGAAATAAGTTGTTTCTGCTACTGAACCAACTAGTCAAACTAGGCATTCCACTAATTGCTGCTGGATTGGCCGTAGGGCTTG
CTTCTATTGGGCCTGGAGTTGGTCAAGGTACTGCTGCAGGACAAGCTGTAGAAGGTATTGCGAGACAGCCAGAAGCTGAAGGTAAAATACGAGGTACTTT
AT