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Detailed information on CNT30596052


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672423Oryza meridionalisSetaria viridis25.3227.9993.48138forward
CNT30179357Oryza meridionalisSecale cereale39.0821.9694.37213forward
CNT30386304Oryza meridionalisTriticum turgidum31.0131.4195.27169forward
CNT30553525Oryza meridionalisOryza glaberrima50.2838.798.54274forward
CNT3017553Oryza meridionalisZea mays21.4745.3594.02117forward
CNT30130033Oryza meridionalisCorymbia citriodora21.2819.2485.34116reverse complement
CNT30349409Oryza meridionalisEragrostis tef41.8319.0692.54228forward
CNT30101149Oryza meridionalisOryza rufipogon100.92100.9294.91550forward
CNT30498207Oryza meridionalisDigitaria exilis25.8727.3892.91141forward
CNT30604057Oryza meridionalisOryza punctata71.9398.4988.52392forward

Expression of CNT30596052

Peptides detected in this lncRNA

>peptide 1 (45 aa)
GLSEANSFLFIIHSMYHDMPPATENIQCREPKDGQEILKEGVKIK*

>peptide 2 (92 aa)
MSGGGVVPGGGPVGGAADAGHGVDLGEGVDLEGGAAHDALAVHPRHRLQPVHRVLEALEPTLAVEHAPHRERRVRLAAASLHYLPLVADHHRP

>peptide 3 (72 aa)
MELILVKVSTLKVAPHMTPSLSTRGIAFSRFIGCSKLLSPPSLWNMHPTGNGAYDLPQPPFTISLSSQITTDP

Sequence

>CNT30596052
TGGATTGAGTGAAGCAAACTCTTTCTTATTCATCATTCATAGTATGTACCATGACATGCCACCCGCGACCGAGAATATACAATGCCGAGAGCCCAAAGAT
GGACAAGAAATTTTAAAAGAAGGGGTGAAAATTAAGTAAAAACACAGCAGAAAAATAGATTGGCGCGCTTCCACGCTAGCTGCAAATATCGCTCTAATAA
TCTGCATGCTTCGGACGTACGGAGAAGCACATCGGATATAGAGAGGGGAAGAAGAAGAGGAAGAGATGAGCGGCGGCGGCGTCGTCCCAGGTGGCGGCCC
AGTTGGTGGCGCTGCCGACGCGGGGCATGGAGTTGATCTTGGTGAAGGTGTCGACCTTGAAGGTGGCGCCGCACATGACGCCCTCGCTGTCCACCCGCGG
CATCGCCTTCAGCCGGTTCATCGGGTGCTCGAAGCTCTTGAGCCCACCCTCGCTGTGGAACATGCACCCCACCGGGAACGGCGCGTACGACTTGCCGCAG
CCTCCCTTCACTATCTCCCTCTCGTCGCAGATCACCACCGACCCG