Detailed information on CNT30596024


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002304, E-value = 5e-116

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697161Oryza meridionalisOryza sativa75.0999.0299.5202reverse complement
CNT3089385Oryza meridionalisVigna radiata23.4217.990.4863forward
CNT30143656Oryza meridionalisMedicago truncatula22.35.429060forward
CNT30256205Oryza meridionalisAvena sativa43.129.383.62116reverse complement
CNT3015666Oryza meridionalisZea mays40.153.4288.89108reverse complement
CNT30370229Oryza meridionalisOryza glumipatula87.3610097.87235forward
CNT30319789Oryza meridionalisAsparagus officinalis48.762.9883.21131forward
CNT30147808Oryza meridionalisBrachypodium distachyon35.326.3385.2695forward
CNT30103646Oryza meridionalisOryza rufipogon94.0532.6998.81253reverse complement
CNT30174954Oryza meridionalisVigna angularis23.4224.6192.0663forward

Expression of CNT30596024

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MSFLHTLSSLVCTREEFPGRSPIPNCSRPSTLNPGVLWRLASGKELQLVDMSILLILLS

>peptide 2 (80 aa)
HLCNVPPSPGRAHLHLIAFIGHRLPSQTNTCLFCTLCPHSCAPGKNFPVGHPSQIAPGQARLTLEFFGDWLPEKNCNLLI*

Sequence

>CNT30596024
TACATTTGTGTAACGTCCCGCCTTCCCCAGGCCGGGCCCACTTACATCTGATAGCTTTCATAGGTCATAGACTGCCCTCACAGACCAACACATGTCTTTT
CTGCACACTTTGTCCTCACTCGTGTGCACCCGGGAAGAATTTCCCGGTCGGTCACCCATCCCAAATTGCTCCAGGCCAAGCACGCTTAACCCTGGAGTTC
TTTGGAGATTGGCTTCCGGAAAAGAATTGCAACTTGTTGATATGAGTATTCTATTAATCCTATTAAGCC