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Detailed information on CNT30595988


BLAST search results

BLAST vs Swiss-Prot:
sp|A6YG60|YCF3_PLETE, E-value = 3e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30529029Oryza meridionalisEucalyptus grandis33.417.0490.54349forward
CNT30618959Oryza meridionalisSesamum indicum32.735.4391.23342forward
CNT30632355Oryza meridionalisVigna unguiculata32.5439.1790340forward
CNT3047566Oryza meridionalisPrunus dulcis32.2517.4792.28337forward
CNT30589320Oryza meridionalisMusa acuminata14.1630.4597.3148forward
CNT30237795Oryza meridionalisBrassica oleracea31.778.6589.46332forward
CNT30510815Oryza meridionalisSolanum lycopersicum24.8854.5189.62260forward
CNT30446760Oryza meridionalisSaccharum spontaneum28.826.6696.01301forward
CNT30655383Oryza meridionalisRosa chinensis32.259.4193.77337forward

Expression of CNT30595988

Peptides detected in this lncRNA

>peptide 1 (52 aa)
EERDIMKFLIRSSDLIYLINGSTTKPPFYEKGEWSYSNSKRFVIFNQFCASI*

Sequence

>CNT30595988
AGAGGAAAGAGATATAATGAAATTCTTGATTCGATCTTCCGACCTAATTTATTTGATTAATGGATCAACAACCAAACCCCCATTTTATGAAAAAGGAGAG
TGGTCTTATTCAAATTCAAAGCGCTTCGTAATCTTCAACCAGTTCTGTGCTTCAATATAATTTCCCGGAGTAAGCGCTATAGCTTGTTTCCAATACTCAG
CAGCTTGATCAAACCAAGCTTCTGCAATTTCTGAATCACCCTNTGTGCTTCAATATAATTTCCCGGAGTAAGCGCTATAGCTTGTTTCCAATACTCAGCA
GCTTGATCAAACCAAGCTTCTGCAATTTCTGAATCACCCTGTAGAATGGCCTGTTCTCCCCGGTCGGAATAGATCACGGCCACATTATTAAAAGCTTGTG
GTAAGAAGGGGTTTCGTTCTAGTGCCCGGAAATAATATTCCAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGNCCTTTTCTAGTAAATACTAG
AAAATTTGATCCTTTCTTATTTTTCTTTCTATAGTGGAGATAGTCGCACGTAATGACAGATCACGGCCATATTATTAAAAGCTTGTGGTAAGAAGGGGTT
TCGTTCTAGTGCCCGGAAATAATATTCCAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGGCCTATGTTATAGAGTATATAACTTCGATCATAG
GGATCAATTTCTAGTCGCGTAGCTTCATAATAATTTTGCAAAGCTTCCGCATAATTTCCTTCGGATTGAGCCAACATCCGTTACGGTCGTTCGTTCTATT
CAAAAAATCTCCGTTCCAAAACCGTACATGAGGTTTTCACCTCATACGGCTCCTCCCTTCTGTACATAGTACTAAGCGAAAAAATCTAGAGAATAAAAAT
AGAATTAGTTCCATCTCATTATGGACCGAAAGGGGCTGGTATTTTTCCAAGAAATCTCTAGNTTCGTTCTATTCAAAAAATCTCCGTTCCAAAACCGTAC
ATGAGGTTTTCACCTCATACGGCTCCTCCCTTCTGTACATAGTAC