Detailed information on CNT30595986


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FEQ8|PER2_MAIZE, E-value = 8e-123

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523062Oryza meridionalisSetaria italica11.0827.9785.85106forward
CNT30385102Oryza meridionalisTriticum turgidum26.8529.6484.82257forward
CNT301235Oryza meridionalisZea mays50.9940.0783.61488forward
CNT30341070Oryza meridionalisEragrostis tef27.1798.8679.23260forward
CNT30100585Oryza meridionalisOryza rufipogon37.174.4283.66355forward
CNT30116322Oryza meridionalisOryza nivara23.7218.9888.99227forward

Expression of CNT30595986

Peptides detected in this lncRNA

>peptide 1 (29 aa)
PKSKWLLYYFYHHVETQYTNTTISIYKNQ*

>peptide 2 (31 aa)
QRANGYFITFTIMLKHSTLIQQSQYIKINNK*

>peptide 3 (32 aa)
MLALSSTIFAVAGDVRSDASEVKSALCASTFL*

>peptide 4 (62 aa)
MSEGTARRSGTKDEQCERPTVWEPASTTMSSTPSPLAAKLATSWPRLNLGGGRKSRVRDALE*

>peptide 5 (69 aa)
MSNDTLLLLRKKEASRAAKATMSAQETTPGHAASTAALAASMTSKPRRLGMLGGLSFSGCGFAGVGSSST

Sequence

>CNT30595986
CCAAAGAGCAAATGGTTACTTTATTACTTTTACCATCATGTTGAAACACAGTACACTAATACAACAATCTCAATATATAAAAATCAATAATAAATAAGGA
ATGAAACAAACAAGATGCATCAGCATATCAGCTGTTAACAGAGAGCAAAGATAGGCTTGGAATGGTGAACACTCGGGACGTTCATGATTATCTGAGGCTC
TGAGCTAGTAATTCACAGCCCGGCAGTTCCTCCTGACCTCGCCATTGCCGCCGGTCTTCACCTCGACGGCGGCCAACTTCACCATTGCCTTCTGGAACCT
GTCCTCCCACCACCCGGGGATGTTGGCGTTGTCCAGCACCATCTTCGCCGTCGCCGGCGACGTCAGGAGCGACGCGTCCGAGGTGAAGAGCGCCTTGTGC
GCGAGCACGTTCTTGTAGTACTCGTTGTCCAGCTTGTTCGGCGTCTCGACGTCCTGCACCACCGTGGGATCGTTGCCTGAGCTCGGGCTCGCCGGGCACT
GCCTCCGCAGCGTGGCGGCGAACGACGGGTCGATGTCGGAGGGCACGGCGAGGCGGTCGGGGACGAAGGACGAGCAGTGCGAGCGGCCGACGGTGTGGGA
GCCGGCGAGCACCACCATGTCCTCGACGCCGAGCCCCTTGGCGGCGAAGTTGGCGACGAGCTGGCCGAGGTTGAACTTGGGCGGCGGGAGGAAGTCGAGG
GTGCGCGACGCGTTGGAGTAGCGCCCGTCGAGGCGGCCCGACGGCATGTCGAACGACACTCTGCTGTTGCTGAGGAAGAAGGAGGCGTCGCGCGCGGCGA
AGGCGACGATGTCAGCGCAGGAGACGACGCCCGGGCACGCCGCCTCGACGGCGGCCTTGGCGGCGTCGATGACCTCGAAGCCGCGGAGGCTGGGCATGTT
GGGCGGGCTGAGCTTCTCCGGCTGCGGGTTCGCCGGCGTCGGGTCGAGCAGCACGGA