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Detailed information on CNT30595966


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Oryza meridionalisOryza sativa25.7727.5799.37158forward
CNT30674723Oryza meridionalisSetaria viridis31.6522.0290.21194forward
CNT30522155Oryza meridionalisSetaria italica35.5624.894.04218forward
CNT30641079Oryza meridionalisNymphaea colorata56.2846.4391.59345forward
CNT30377201Oryza meridionalisArabidopsis thaliana30.1832.3485.95185forward
CNT30727252Oryza meridionalisCorchorus capsularis31.1625.586.39191forward
CNT30629386Oryza meridionalisVigna unguiculata24.3157.7588.59149forward
CNT30486254Oryza meridionalisOlea europaea28.5545.6985.14175forward
CNT30708222Oryza meridionalisGlycine max25.6138.9683.44157forward
CNT3092760Oryza meridionalisSolanum tuberosum26.5923.5583.44163forward
CNT30291318Oryza meridionalisTriticum aestivum29.6954.6588.46182forward
CNT30223001Oryza meridionalisHordeum vulgare25.2955.7688.39155forward
CNT30390564Oryza meridionalisTriticum turgidum16.9734.2189.42104forward
CNT30562825Oryza meridionalisActinidia chinensis24.3126.9988.59149forward
CNT30586804Oryza meridionalisMusa acuminata25.6120.3492.36157forward
CNT30511260Oryza meridionalisSolanum lycopersicum20.5531.2784.92126forward
CNT30553024Oryza meridionalisOryza glaberrima38.0116.3298.28233forward
CNT30442409Oryza meridionalisAegilops tauschii32.9530.1586.14202forward
CNT30253208Oryza meridionalisAvena sativa30.5115.5683.96187forward
CNT30261872Oryza meridionalisBrassica rapa31.1621.5887.96191forward
CNT30614070Oryza meridionalisArabis alpina27.4112.1685.12168forward
CNT301973Oryza meridionalisZea mays14.3636.8296.5988forward
CNT3041960Oryza meridionalisChlamydomonas reinhardtii14.8526.6990.1191forward
CNT30608822Oryza meridionalisGossypium raimondii33.1230.382.76203forward
CNT30209019Oryza meridionalisHelianthus annuus28.7121.0884.09176forward
CNT30627268Oryza meridionalisDaucus carota31.1615.4382.2191forward
CNT30681848Oryza meridionalisTriticum urartu40.9528.3688.05251forward
CNT30721961Oryza meridionalisTriticum spelta17.6236.4994.44108forward
CNT30341625Oryza meridionalisEragrostis tef32.9520.7286.14202forward
CNT30361407Oryza meridionalisSorghum bicolor34.2641.195.71210forward
CNT30370114Oryza meridionalisOryza glumipatula45.8434.3198.58281forward
CNT30433292Oryza meridionalisPapaver somniferum31.1618.2380.1191forward
CNT30570854Oryza meridionalisVitis vinifera23.3371.1486.01143forward
CNT30706519Oryza meridionalisPrunus avium29.0421.4783.71178forward
CNT3033661Oryza meridionalisTheobroma cacao23.8270.1984.25146forward
CNT3054138Oryza meridionalisAmborella trichopoda28.2234.1279.77173forward
CNT3024644Oryza meridionalisPopulus trichocarpa35.5610.6684.86218forward
CNT30322043Oryza meridionalisAsparagus officinalis35.8926.2886.36220forward
CNT3036150Oryza meridionalisCucumis melo11.9121.6684.9373forward
CNT30150001Oryza meridionalisBrachypodium distachyon10.7720.8990.9166forward
CNT3099978Oryza meridionalisOryza rufipogon38.6629.2692.41237forward
CNT30575530Oryza meridionalisOryza barthii45.8431.1298.58281forward
CNT30333708Oryza meridionalisCynara cardunculus30.1822.8485.41185forward

Expression of CNT30595966

Peptides detected in this lncRNA

>peptide 1 (44 aa)
TRNLNNDDDVRRHATSSSAQYTSSSRHGNGTLCVCTDRNICSVA*

>peptide 2 (41 aa)
MLLSASVNSISSIPSLVYQWSCRRRWTPWRGRRGGCRRRWT*

>peptide 3 (30 aa)
MQQVVAHSTQAAADTATAHCVFVPIEIYVA*

Sequence

>CNT30595966
AGACAAGAAACCTGAACAACGACGACGACGTACGAAGGCATGCAACAAGTAGTAGCGCACAGTACACAAGCAGCAGCAGACACGGCAACGGCACATTGTG
TGTTTGTACCGATCGAAATATATGTAGCGTAGCGTAGCAGAGAGCCAGAGAGGCAAAGCGGGAGAGATCGATCGATCGATCAGGCCTCGTCGGCGGCGGC
GGCGTCGTCCTCCTCGTCGTAGTCGTCCTCGGCGGTGGCGTCCTGGTACTGCTGGTACTCGGCGACGAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAAC
TCCATCTCGTCCATTCCCTCGCTGGTGTACCAGTGGAGTTGCCGACGAAGGTGGACGCCATGGAGAGGCCGACGGGGGGGATGTCGCAGACGCTGGACTT
GACGTTGTTGGGGATCCACTCCACGAAGTAGGACGAGTTCTTGTTCTGCACGTTGATCATCTGCTCGTCCACCTCTTTGGTGCTCATCCTGCCCCGGAAC
ATGGCGGACGCCGTCAGGTAGCGGCCGTGGCGCGGGTCGGCGGCGCACATCATGTTCTTGGCGTCCCACATCTGCTGCGTCAGCTCCGGCACCGTCAGAG
ACCTGTACTGCTG