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Detailed information on CNT30595942


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692282Oryza meridionalisOryza sativa97.0194.1997.07648forward
CNT30369931Oryza meridionalisOryza glumipatula95.36100.1697.17637forward
CNT30100647Oryza meridionalisOryza rufipogon99.149.2296.53662reverse complement
CNT30116064Oryza meridionalisOryza nivara93.5695.5797.6625forward

Expression of CNT30595942

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MRGCEGRSRRRLRACVRTVYTRRIGTAGGGGVLYGSKRFFACHRSPGHW*

>peptide 2 (33 aa)
MRREIEKKATCVRSYRIYKAYRYGRRRRSIVRI*

>peptide 3 (44 aa)
THSIASGKASSSSRLPPGSSFHCLRPLQWRTRRPHPRMTSPVIA*

>peptide 4 (37 aa)
PIALPPERPLLLVVSLPAPPSIASGLSNGEPGGRTHE*

Sequence

>CNT30595942
TACCCATAGCATTGCCTCCGGAAAGGCCTCTTCTTCTAGTCGTCTCCCTCCCGGCTCCTCCTTCCATTGCCTCCGGCCTCTCCAATGGCGAACCCGGCGG
CCGCACCCACGAATGACTAGCCCTGTCATTGCCTAGTCTCGGCCAATGTAGGTGTAAGAGGGTGCGGCCGCCGCCGCCGCCACCAAAGGCAGACAGGATG
GAGCCAGGCGTTACTTGTAGTTGTACTACTGTCTACTACCAACGATGAGAGGATGCGAAGGGAGATCGAGAAGAAGGCTACGTGCGTGCGTTCGTACCGT
ATATACAAGGCGTATAGGTACGGCCGGAGGCGGCGGAGTATTGTACGGATCTAAAAGGTTCTTTGCTTGCCACCGCTCTCCGGGTCATTGGTGATGTTTT
CACTTAATTTTCCTTTTCAGTAGTTTATATTGATGGGTGGAGGATATCTTTGAGCAAAGTCCTCTGAATTTTGAACCAGTTTGCTTATTATTTTTGTTCC
TTCTTCGAGTTTTGGTTTTACGGAGAGATTTTTATGCCCCTGACTCTTCTCGTGTAAGTTTGCGAGCAGCGCTTGACTGCTGTTGTGGCTCGAGTAGTTT
TAAGTCTATATATTGGGTTCTTCCATATTAAGCTTGAACTGCATCAAAAGGGTTATGCTAAACTTCTA