Detailed information on CNT30595935


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30502658Oryza meridionalisNicotiana attenuata17.692088.4652forward
CNT30553486Oryza meridionalisOryza glaberrima63.2762.8491.4186forward
CNT30576032Oryza meridionalisOryza barthii63.2762.8491.4186forward

Expression of CNT30595935

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MVRPFRVLRSWDGGAWAKALVLTVPRVAGVSSFFFSDAFVWKKKRITTAN*

>peptide 2 (77 aa)
RAQQRELVTRAGPLRWCGRVAVWLLACLQCHRWSARFEFCVAGTAGLGRKLWSSRFLEWQAFRHFFFLMLSFGKKKE*

>peptide 3 (31 aa)
PSSAARACNPSGAIKVVWTCCRMAARLFAVP*

Sequence

>CNT30595935
GCCGAGCTCAGCAGCGCGAGCTTGTAACCCGAGCGGGGCCATTAAGGTGGTGTGGACGTGTTGCCGTATGGCTGCTCGCCTGTTTGCAGTGCCATAGATG
GTCCGCCCGTTTCGAGTTTTGCGTAGCTGGGACGGCGGGGCTTGGGCGAAAGCTCTGGTCCTCACGGTTCCTAGAGTGGCAGGCGTTTCGTCATTTTTTT
TTTCTGATGCTTTCGTTTGGAAAAAAAAAAGAATAACAACTGCCAACTAATAATCAATATGGCATTCTTGCTTAAAAATTTGAAGACTAATTGA